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[174845_s_at]

Description CEK052E3R_rc /REP_DB=TREMBL Accession /GB=D64444 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk52e3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 01      6grp_total > 37      4grp_total > 54      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2004
1 2 3 4 range
A 2777.4
(3)
P 		1267
(-2.7)
P 		1525.6
(-1.7)
P 		1195
(-3)
P 		1582
B 2820.6
(3)
P 		1579.6
(-2)
P 		1520.3
(-2.2)
P 		1319.6
(-3)
P 		1501
C 2966
(3)
P 		1598.1
(-1.1)
P 		1619.2
(-1)
P 		961.9
(-3)
P 		2004
avr 2854.7
(3) 		1481.6
(-1.9) 		1555
(-1.6) 		1158.8
(-3) 		1696

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1314
1 2 3 4 5 6 range
A 2556.6
(3)
P 		2214.4
(0.7)
P 		1674.9
(-3)
P 		1702.2
(-2.8)
P 		1958.2
(-1.1)
P 		2075.1
(-0.3)
P 		882
B 2768.5
(3)
P 		1983.7
(-0.6)
P 		1610.3
(-2.3)
P 		1976.4
(-0.6)
P 		1465.6
(-3)
P 		2266.2
(0.7)
P 		1303
C 2332.4
(2.8)
P 		2361.7
(3)
P 		2024.8
(0.8)
P 		2042.6
(0.9)
P 		1454.7
(-3)
P 		2013.8
(0.7)
P 		907
avr 2552.5
(3) 		2186.6
(0.6) 		1770
(-2.1) 		1907.1
(-1.2) 		1626.2
(-3) 		2118.4
(0.2) 		926
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 849
1 2 3 4 range
A 1011.2
(3)
P 		275
(-2.3)
P 		398.8
(-1.4)
P 		174.9
(-3)
P 		836
B 899.5
(3)
P 		390.1
(-1.9)
P 		352.3
(-2.3)
P 		281.2
(-3)
P 		618
C 981.8
(3)
P 		459.5
(-0.8)
P 		564.4
(-0.1)
P 		162.2
(-3)
P 		820
avr 964.2
(3) 		374.9
(-1.7) 		438.5
(-1.2) 		206.1
(-3) 		758

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 599
1 2 3 4 5 6 range
A 471.3
(-1.5)
P 		787.5
(3)
P 		364.8
(-3)
P 		431.7
(-2.1)
P 		590.9
(0.2)
P 		505.2
(-1)
P 		423
B 963.3
(3)
P 		660.3
(-0.2)
P 		391
(-3)
P 		523.5
(-1.6)
P 		595.4
(-0.9)
P 		845.1
(1.8)
P 		572
C 864.5
(3)
P 		720.6
(1.1)
P 		515.4
(-1.6)
P 		410.8
(-3)
P 		470.7
(-2.2)
P 		674.1
(0.5)
P 		454
avr 766.4
(3) 		722.8
(2.2) 		423.7
(-3) 		455.3
(-2.4) 		552.3
(-0.7) 		674.8
(1.4) 		343
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174845_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21181
Sequence Type Exemplar sequence
Representative Public ID CEK052E3R NCBI
Target Description CEK052E3R_rc /REP_DB=TREMBL Accession /GB=D64444 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk52e3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171215(11), NM_066524(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171215 NCBI Caenorhabditis elegans ZK370.3a (Talin) mRNA, complete cds. 11/11 None
NM_066524 NCBI Caenorhabditis elegans ZK370.3b (Talin) mRNA, complete cds. 11/11 None
ZK370.3a ENSEMBL cdna:known chromosome:CEL140:III:8720103:8725236:1 gene:ZK370.3 11/11 A 
ZK370.3b ENSEMBL cdna:known chromosome:CEL140:III:8720106:8725223:1 gene:ZK370.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8724875-8725207(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK370.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28205 Hypothetical protein ZK370.3a [Caenorhabditis elegans] ref|NP_741253.1| ZK370.3a [Caenorhabditis elegans] sp|Q02328|SLAP2_CAEEL Protein SLA2 homolog 0.0
blast AAL11480 Hypothetical protein ZK370.3b [Caenorhabditis elegans] ref|NP_498925.1| ZK370.3b [Caenorhabditis elegans] 0.0
blast S44664 ZK370.3 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002558 EMBL-EBI I/LWEQ domain 1.1E-121
Pfam IPR001026 EMBL-EBI Epsin N-terminal homology 7.5E-37
Sequence
Target Sequence 
>C. ELEGANS:174845_S_AT
aaaatctcaaattgctccactgcttaatttgtttataccaattttatcgtcccactttga
gaaactagtcactcccagtgtcctgtgatttcggtgcccatccaacagtctatagagaaa
tgttttataatttgtaaatgtttgtaaatctcttattcta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAATCTCAAATTGCTCCACTGCTT 684 133 151 Antisense
ATTGCTCCACTGCTTAATTTGTTTA 524 5 161 Antisense
TCCACTGCTTAATTTGTTTATACCA 131 589 166 Antisense
TTTATACCAATTTTATCGTCCCACT 20 675 182 Antisense
ACCAATTTTATCGTCCCACTTTGAG 306 85 187 Antisense
TTTATCGTCCCACTTTGAGAAACTA 451 671 193 Antisense
GTCCCACTTTGAGAAACTAGTCACT 666 475 199 Antisense
TCACTCCCAGTGTCCTGTGATTTCG 610 627 219 Antisense
TCCCAGTGTCCTGTGATTTCGGTGC 135 597 223 Antisense
GTGCCCATCCAACAGTCTATAGAGA 503 477 244 Antisense
AAATGTTTGTAAATCTCTTATTCTA 241 121 286 Antisense
Sequence Source Affymetrix Proprietary Database