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[174844_at] Ubiquitin carboxyl-terminal hydrolases family 2

Description CEK025F9R_rc /REP_DB=TREMBL Accession /GB=D33065 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 88      6grp_total > 49      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1159
1 2 3 4 range
A 1583.3
(3)
P 		681.7
(-3)
P 		771.5
(-2.4)
P 		1070.8
(-0.4)
P 		902
B 1330
(0.1)
P 		933
(-2.2)
P 		794.8
(-3)
P 		1840.8
(3)
P 		1046
C 1347.6
(0.2)
P 		919.2
(-3)
P 		1057.8
(-2)
P 		1716.4
(3)
P 		797
avr 1420.3
(1.9) 		844.6
(-3) 		874.7
(-2.7) 		1542.7
(3) 		698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1175
1 2 3 4 5 6 range
A 1160.1
(-1)
P 		1192.9
(-0.7)
P 		884.4
(-3)
P 		968
(-2.4)
P 		1703.5
(3)
P 		1636
(2.5)
P 		819
B 1473.4
(2.5)
P 		1325.8
(1.6)
P 		598.3
(-3)
P 		1280.8
(1.3)
P 		1119.8
(0.3)
P 		1555
(3)
P 		957
C 1433.9
(0.4)
P 		1219.1
(-1.2)
P 		1031.4
(-2.6)
P 		978.5
(-3)
P 		1483.2
(0.8)
P 		1772.9
(3)
P 		794
avr 1355.8
(0.8) 		1245.9
(-0) 		838
(-3) 		1075.8
(-1.3) 		1435.5
(1.4) 		1654.6
(3) 		817
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 429
1 2 3 4 range
A 576.5
(3)
P 		148
(-3)
P 		201.7
(-2.2)
P 		156.7
(-2.9)
P 		429
B 424.1
(3)
P 		230.4
(-1.8)
P 		184.2
(-3)
P 		392.3
(2.2)
P 		240
C 446.1
(3)
P 		264.3
(-3)
P 		368.7
(0.4)
P 		289.4
(-2.2)
P 		182
avr 482.2
(3) 		214.2
(-3) 		251.5
(-2.2) 		279.5
(-1.5) 		268

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 213.9
(-2.6)
P 		424.3
(1.3)
P 		192.6
(-3)
P 		245.5
(-2)
P 		514
(3)
P 		398.3
(0.8)
P 		321
B 512.7
(2.1)
P 		441.3
(1.1)
P 		145.3
(-3)
P 		339.2
(-0.3)
P 		454.9
(1.3)
P 		579.8
(3)
P 		435
C 531.5
(2.1)
P 		372
(-0.4)
P 		262.5
(-2)
P 		196.8
(-3)
P 		479.9
(1.3)
P 		593.5
(3)
P 		397
avr 419.4
(1.1) 		412.5
(0.9) 		200.1
(-3) 		260.5
(-1.9) 		482.9
(2.2) 		523.9
(3) 		324
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174844_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20903
Sequence Type Exemplar sequence
Representative Public ID CEK025F9R NCBI
Target Description CEK025F9R_rc /REP_DB=TREMBL Accession /GB=D33065 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk25f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027399(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027399 NCBI Caenorhabditis elegans F40F12.5 (F40F12.5) mRNA, complete cds. 11/11 None
F40F12.5 ENSEMBL cdna:known chromosome:CEL140:III:9898504:9910548:-1 gene:F40F12.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:9898509-9898875(-) 100.0 100.0
Public Domain and Genome References
Gene Title Ubiquitin carboxyl-terminal hydrolases family 2
Ensembl F40F12.5
Entrez Gene 176401 Entrez gene
SwissProt Q7JMS4 EMBL-EBI
WormBase CE36647 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAF31477 Hypothetical protein F40F12.5 [Caenorhabditis elegans] ref|NP_001022570.1| F40F12.5 [Caenorhabditis elegans] 0.0
blast F88568 protein F40F12.5 [imported] - Caenorhabditis elegans 0.0
blast S42834 F40F12.5 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001394 EMBL-EBI Peptidase C19, ubiquitin carboxyl-terminal hydrolase family 2 2.2E-5
Pfam IPR000938 EMBL-EBI CAP-Gly domain 1.7E-20
Sequence
Target Sequence 
>C. ELEGANS:174844_AT
tctgtaatttttatctttccccatcccttctaatttcttcaagtcctcctacacctttgc
ttctacgggcttcacatttccttaaagaatttttaaagaatctgaaaaattaaaaaaaaa
caaattgtctgtaattatctgtgtacgtaacttctgaaccatttaacacttttcccccaa
gcccggtcgtttaattgtgtcttttgcccccactctgatttacccgttttgcttcttaga
atggtgaatgtaattcaactagttgtttccctctcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTGTAATTTTTATCTTTCCCCATC 273 605 67 Antisense
CCCATCCCTTCTAATTTCTTCAAGT 279 259 86 Antisense
TCTAATTTCTTCAAGTCCTCCTACA 478 613 95 Antisense
TTCTACGGGCTTCACATTTCCTTAA 623 543 127 Antisense
ATTGTCTGTAATTATCTGTGTACGT 289 5 190 Antisense
ATCTGTGTACGTAACTTCTGAACCA 330 31 203 Antisense
GTAACTTCTGAACCATTTAACACTT 676 457 213 Antisense
CAAGCCCGGTCGTTTAATTGTGTCT 318 185 244 Antisense
TGATTTACCCGTTTTGCTTCTTAGA 666 561 282 Antisense
TTACCCGTTTTGCTTCTTAGAATGG 334 667 286 Antisense
AATTCAACTAGTTGTTTCCCTCTCG 580 175 318 Antisense
Sequence Source Affymetrix Proprietary Database