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[174842_s_at]

Description CEK079G8R_rc /REP_DB=TREMBL Accession /GB=D71672 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_high_8_8 > 23      6grp_highest_nonorm > 93      6grp_total > 98      4grp_total > 0      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 142
1 2 3 4 range
A 117.7
(-3)
P 		122.9
(-2.5)
A 		185.3
(3)
P 		170.5
(1.7)
A 		68
B 199
(-0.9)
P 		166.1
(-3)
P 		221.6
(0.6)
P 		259.8
(3)
P 		94
C 202.6
(3)
P 		171.1
(-3)
P 		187.1
(0)
P 		171.2
(-3)
P 		32
avr 173.1
(-0.5) 		153.4
(-3) 		198
(2.7) 		200.5
(3) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 609
1 2 3 4 5 6 range
A 132.5
(-3)
P 		274.1
(-1.2)
P 		237
(-1.7)
P 		229
(-1.8)
P 		531
(2.1)
P 		604.8
(3)
P 		472
B 233.8
(-2.2)
P 		159.1
(-3)
P 		165.8
(-2.9)
P 		262.1
(-1.9)
P 		537.5
(0.9)
P 		741.2
(3)
P 		582
C 221.4
(-2.3)
P 		220.2
(-2.3)
P 		176.8
(-3)
P 		232.8
(-2.1)
P 		497.8
(2.1)
P 		554.6
(3)
P 		378
avr 195.9
(-3) 		217.8
(-2.7) 		193.2
(-3) 		241.3
(-2.3) 		522.1
(1.5) 		633.5
(3) 		440
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 42
1 2 3 4 range
A 42.9
(1.6)
P 		26.7
(-2.6)
A 		48.5
(3)
P 		25
(-3)
A 		24
B 63.5
(3)
P 		41
(-3)
P 		51.3
(-0.3)
P 		55.4
(0.8)
P 		23
C 67.1
(3)
P 		49.2
(0.2)
P 		65.2
(2.7)
P 		28.9
(-3)
P 		38
avr 57.8
(3) 		39
(-2.3) 		55
(2.2) 		36.4
(-3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 252
1 2 3 4 5 6 range
A 24.4
(-3)
P 		97.5
(0.2)
P 		51.6
(-1.8)
P 		58.1
(-1.5)
P 		160.2
(3)
P 		147.3
(2.4)
P 		136
B 81.3
(-2)
P 		53
(-2.7)
P 		40.3
(-3)
P 		69.4
(-2.3)
P 		218.4
(1.5)
P 		276.4
(3)
P 		236
C 82.1
(-1.4)
P 		67.2
(-2.1)
P 		45
(-3)
P 		46.8
(-2.9)
P 		161.1
(2)
P 		185.6
(3)
P 		141
avr 62.6
(-2.4) 		72.6
(-2) 		45.6
(-3) 		58.1
(-2.5) 		179.9
(2.1) 		203.1
(3) 		158
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174842_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20775
Sequence Type Exemplar sequence
Representative Public ID CEK079G8R NCBI
Target Description CEK079G8R_rc /REP_DB=TREMBL Accession /GB=D71672 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk79g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062527(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062527 NCBI Caenorhabditis elegans F33G12.4 (F33G12.4) mRNA, complete cds. 11/11 A 
SNAP00000025575 ENSEMBL cdna:SNAP chromosome:CEL140:II:5034279:5036410:-1 9/11 None
GENEFINDER00000025584 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5034245:5036410:-1 11/11 None
F33G12.4.3 ENSEMBL cdna:known chromosome:CEL140:II:5033794:5036423:-1 gene:F33G12.4 11/11 A 
F33G12.4.2 ENSEMBL cdna:known chromosome:CEL140:II:5033816:5036423:-1 gene:F33G12.4 11/11 A 
F33G12.4.1 ENSEMBL cdna:known chromosome:CEL140:II:5034128:5036423:-1 gene:F33G12.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5034148-5034571(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F33G12.4
Entrez Gene 173869 Entrez gene
SwissProt Q19988 EMBL-EBI
WormBase CE27150 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31512 Hypothetical protein F33G12.4 [Caenorhabditis elegans] ref|NP_494928.1| F33G12.4 [Caenorhabditis elegans] 0.0
blast T16243 hypothetical protein F33G12.4 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.033
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.22
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.64
Pfam IPR001611 EMBL-EBI Leucine-rich repeat 0.11
Sequence
Target Sequence 
>C. ELEGANS:174842_S_AT
gacttcggcatattcgatatattcgaccacttattatacaatccagacaaattgctaatt
ctgtcgacgtgatcggaagatttgtcacatttgaccgtcttctctgtatcgactgttacc
ggagaacaacttcaacaaacaatggagaaccgccgttccaatgtgattacttccaatttg
cagtctaatttttcattattatctcaccttactcattttta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACTTCGGCATATTCGATATATTCG 372 371 14 Antisense
ATTCGACCACTTATTATACAATCCA 345 9 34 Antisense
ATTGCTAATTCTGTCGACGTGATCG 378 5 64 Antisense
TGATCGGAAGATTTGTCACATTTGA 183 559 83 Antisense
CCGTCTTCTCTGTATCGACTGTTAC 230 265 108 Antisense
GACTGTTACCGGAGAACAACTTCAA 425 191 124 Antisense
AACAATGGAGAACCGCCGTTCCAAT 412 133 151 Antisense
AACCGCCGTTCCAATGTGATTACTT 662 145 161 Antisense
GTGATTACTTCCAATTTGCAGTCTA 44 485 176 Antisense
TTTTCATTATTATCTCACCTTACTC 619 675 203 Antisense
TATTATCTCACCTTACTCATTTTTA 547 661 210 Antisense
Sequence Source Affymetrix Proprietary Database