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[174841_at]

Description CEK027D1R_rc /REP_DB=TREMBL Accession /GB=D33180 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27d1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 60      4grp_high_8_8 > 25      6grp_highest_nonorm > 82      6grp_total > 58      4grp_total > 38      6grp_highest_sub > Cu      6grp_cgc > 28      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 141
1 2 3 4 range
A 368.4
(3)
P 		278.2
(-2.1)
P 		262.1
(-3)
P 		320.5
(0.3)
P 		106
B 349.4
(3)
P 		300.7
(-1.1)
P 		278.9
(-3)
P 		334.4
(1.7)
P 		71
C 402.6
(3)
P 		362.1
(0.3)
P 		349.2
(-0.5)
P 		311.7
(-3)
P 		91
avr 373.5
(3) 		313.7
(-1.7) 		296.7
(-3) 		322.2
(-1) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 424.8
(0)
P 		357.4
(-1.4)
P 		327.3
(-2.1)
P 		284.3
(-3)
P 		383.4
(-0.9)
P 		562.2
(3)
P 		278
B 514.8
(2.1)
P 		349.3
(-1.8)
P 		300.1
(-3)
P 		445.8
(0.5)
P 		327.2
(-2.4)
P 		551.5
(3)
P 		251
C 374.7
(-1.1)
P 		364.3
(-1.5)
P 		385.6
(-0.7)
P 		328.3
(-3)
P 		439.2
(1.5)
P 		476.5
(3)
P 		148
avr 438.1
(0.1) 		357
(-2.4) 		337.7
(-3) 		352.8
(-2.5) 		383.3
(-1.6) 		530.1
(3) 		192
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 87
1 2 3 4 range
A 134.1
(3)
P 		60.4
(-2.1)
P 		68.5
(-1.5)
P 		46.9
(-3)
P 		87
B 111.4
(3)
P 		74.3
(-1.8)
P 		64.6
(-3)
P 		71.3
(-2.1)
P 		47
C 133.3
(3)
P 		104.1
(0.8)
P 		121.7
(2.1)
P 		52.6
(-3)
P 		81
avr 126.3
(3) 		79.6
(-1) 		84.9
(-0.6) 		56.9
(-3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 140
1 2 3 4 5 6 range
A 78.3
(-2.4)
P 		127.1
(2.1)
P 		71.3
(-3)
P 		72.1
(-2.9)
P 		115.7
(1.1)
P 		136.9
(3)
P 		66
B 179.1
(1.8)
P 		116.3
(-1)
P 		72.9
(-3)
P 		118.1
(-1)
P 		133
(-0.3)
P 		205.7
(3)
P 		133
C 138.9
(1.7)
P 		111.2
(-0.1)
P 		98.1
(-0.9)
P 		66
(-3)
P 		142.1
(1.9)
P 		159.5
(3)
P 		94
avr 132.1
(0.6) 		118.2
(-0.4) 		80.8
(-3) 		85.4
(-2.7) 		130.3
(0.4) 		167.4
(3) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174841_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20811
Sequence Type Exemplar sequence
Representative Public ID CEK027D1R NCBI
Target Description CEK027D1R_rc /REP_DB=TREMBL Accession /GB=D33180 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27d1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq,GenBank identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027351(11), NM_001027352(11), NM_001027350(11), AY487141(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027351 NCBI Caenorhabditis elegans ZYGote defective: embryonic lethal family member (zyg-12) (zyg-12) mRNA, complete cds. 11/11 None
NM_001027352 NCBI Caenorhabditis elegans ZYGote defective: embryonic lethal family member (zyg-12) (zyg-12) mRNA, complete cds. 11/11 None
NM_001027350 NCBI Caenorhabditis elegans ZYGote defective: embryonic lethal family member (zyg-12) (zyg-12) mRNA, complete cds. 11/11 None
AY487141 NCBI Caenorhabditis elegans centrosome attachment protein B (zyg-12) mRNA, partial cds, alternatively spliced. 11/11 None
ZK546.1b ENSEMBL cdna:known chromosome:CEL140:II:4949887:4953477:1 gene:ZK546.1 11/11 A 
ZK546.1a.2 ENSEMBL cdna:known chromosome:CEL140:II:4949896:4953466:1 gene:ZK546.1 11/11 None
ZK546.1c ENSEMBL cdna:known chromosome:CEL140:II:4949896:4953473:1 gene:ZK546.1 11/11 None
ZK546.1a.1 ENSEMBL cdna:known chromosome:CEL140:II:4949896:4953441:1 gene:ZK546.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:4953072-4953453(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK546.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAS60253 Zygote defective: embryonic lethal protein 12, isoform b [Caenorhabditis elegans] ref|NP_001022522.1| ZYGote defective: embryonic lethal family member (zyg-12) [Caenorhabditis elegans] 0.0
blast Q23529 Zygote defective protein 0.0
blast AAS60254 Zygote defective: embryonic lethal protein 12, isoform c [Caenorhabditis elegans] ref|NP_001022523.1| ZYGote defective: embryonic lethal family member (zyg-12) [Caenorhabditis elegans] 0.0
blast AAA68733 Zygote defective: embryonic lethal protein 12, isoform a [Caenorhabditis elegans] ref|NP_001022521.1| ZYGote defective: embryonic lethal family member (zyg-12) [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022522.1 1 744-766
NP_001022523.1 1 729-751
AAR32791.1 1 92-114
ZK546.1b 1 744-766
ZK546.1c 1 729-751
Sequence
Target Sequence 
>C. ELEGANS:174841_AT
attttctttcttctaccatttgacagttcccccatttaattccttatttatttattgtaa
cctgctttcagactgatatctatgacaggaaagcggtgagctccaggctgtgatacccaa
tccttgctcctccaaaaagttcaattctatgtcattctagtttctaatcattcagtttaa
ttgattaattttgagaatctcgcgttgttttcgaacaccgagaagtgtctgtaaattgtg
caacccccgcctctcccgcccacaatctacagtttttggcgtttccttccaaaaactgta
cacattctattcatataaatttcttctgttcttctgactc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTTTCTTTCTTCTACCATTTGACA 2 15 13 Antisense
TGTAACCTGCTTTCAGACTGATATC 510 559 68 Antisense
GACAGGAAAGCGGTGAGCTCCAGGC 297 369 96 Antisense
TGAGCTCCAGGCTGTGATACCCAAT 150 569 109 Antisense
AATCCTTGCTCCTCCAAAAAGTTCA 678 165 131 Antisense
ATGTCATTCTAGTTTCTAATCATTC 623 47 161 Antisense
ATCTCGCGTTGTTTTCGAACACCGA 433 33 209 Antisense
GTGTCTGTAAATTGTGCAACCCCCG 98 487 237 Antisense
CCCGCCCACAATCTACAGTTTTTGG 614 259 267 Antisense
AAACTGTACACATTCTATTCATATA 589 127 305 Antisense
TAAATTTCTTCTGTTCTTCTGACTC 442 641 328 Antisense
Sequence Source Affymetrix Proprietary Database