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[174840_s_at]

Description CEC9393_rc /REP_DB=TREMBL Accession /GB=C10939 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk160d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 90      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 84      6grp_total > 93      4grp_total > 48      6grp_cgc > 99      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 472.7
(0.9)
P 		515.8
(2.1)
P 		547.2
(3)
P 		337.5
(-3)
P 		210
B 412.9
(-1.2)
P 		380.8
(-3)
P 		489.8
(3)
P 		431.3
(-0.2)
P 		109
C 385.7
(-3)
P 		536.1
(1.2)
P 		602.3
(3)
P 		511.1
(0.5)
P 		217
avr 423.8
(-3) 		477.6
(-0.4) 		546.4
(3) 		426.6
(-2.9) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 448.3
(-3)
P 		720.3
(1.7)
P 		446.2
(-3)
P 		519.7
(-1.7)
P 		792.8
(3)
P 		617
(-0)
P 		347
B 633.9
(1)
P 		769.5
(2.8)
P 		344.6
(-3)
P 		573.5
(0.2)
P 		780.5
(3)
P 		649.7
(1.2)
P 		436
C 629.5
(0.8)
P 		698.1
(1.9)
P 		398.6
(-3)
P 		534.5
(-0.8)
P 		767.1
(3)
P 		522.3
(-1)
P 		369
avr 570.6
(-0.3) 		729.3
(2.2) 		396.5
(-3) 		542.6
(-0.7) 		780.1
(3) 		596.3
(0.1) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 161
1 2 3 4 range
A 172.1
(3)
P 		112
(0.1)
P 		143
(1.6)
P 		49.4
(-3)
P 		123
B 131.7
(3)
P 		94.1
(-2.7)
P 		113.5
(0.3)
P 		91.9
(-3)
P 		40
C 127.7
(-1)
P 		154.1
(0.3)
P 		209.9
(3)
P 		86.2
(-3)
P 		124
avr 143.8
(2.1) 		120.1
(0.3) 		155.5
(3) 		75.8
(-3) 		80

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 235
1 2 3 4 5 6 range
A 82.6
(-3)
P 		256.2
(3)
P 		97.2
(-2.5)
P 		131.8
(-1.3)
P 		239.2
(2.4)
P 		150.2
(-0.7)
P 		174
B 220.6
(0.5)
P 		256.1
(1.4)
P 		83.7
(-3)
P 		151.9
(-1.2)
P 		317.1
(3)
P 		242.3
(1.1)
P 		233
C 233.3
(2.4)
P 		213
(1.6)
P 		101.4
(-3)
P 		107.5
(-2.8)
P 		248.2
(3)
P 		174.8
(0)
P 		147
avr 178.8
(-0.1) 		241.8
(2.1) 		94.1
(-3) 		130.4
(-1.7) 		268.2
(3) 		189.1
(0.3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174840_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22141
Sequence Type Exemplar sequence
Representative Public ID CEC9393 NCBI
Target Description CEC9393_rc /REP_DB=TREMBL Accession /GB=C10939 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk160d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029655(11), NM_001029656(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029655 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-4) (abts-4) mRNA, complete cds. 11/11 None
NM_001029656 NCBI Caenorhabditis elegans Anion/Bicarbonate TranSporter family member (abts-4) (abts-4) mRNA, complete cds. 11/11 None
R03E9.3a ENSEMBL cdna:known chromosome:CEL140:X:6747276:6760420:-1 gene:R03E9.3 11/11 A 
R03E9.3b ENSEMBL cdna:known chromosome:CEL140:X:6747316:6760420:-1 gene:R03E9.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044148 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:6747320-6747624(-) 100.0 100.0
Public Domain and Genome References
Ensembl R03E9.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_001024826 Anion/Bicarbonate TranSporter family member (abts-4) [Caenorhabditis elegans] 0.0
blast AAZ32797 Anion/bicarbonate transporter family protein 4, isoform a [Caenorhabditis elegans] gb|AAX34418.1| anion transporter ABTS-4a [Caenorhabditis elegans] 0.0
blast AAX34430 anion transporter ABTS-4b [Caenorhabditis elegans] 0.0
blast NP_001024827 Anion/Bicarbonate TranSporter family member (abts-4) [Caenorhabditis elegans] 0.0
blast AAZ32798 Anion/bicarbonate transporter family protein 4, isoform b [Caenorhabditis elegans] 0.0
blast T28858 hypothetical protein R03E9.3 - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Pfam IPR003020 EMBL-EBI HCO3- transporter 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024826.1 11 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782,812-834,839-856
NP_001024827.1 9 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782
R03E9.3a 11 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782,812-834,839-856
R03E9.3b 9 398-420,432-454,469-488,495-517,561-578,598-615,645-667,688-710,760-782
Sequence
Target Sequence 
>C. ELEGANS:174840_S_AT
tatcagaatactcgcatcccggtataatttctctacaaatttcgtgtctacttctcccca
atctttatcaaatactggtgattttaatatatttgtactaccccactcatttcctcatac
aatcaaatcatgtcaaatctcataatggtgttcttcttctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATCAGAATACTCGCATCCCGGTAT 173 659 27 Antisense
AGAATACTCGCATCCCGGTATAATT 462 73 31 Antisense
ACTCGCATCCCGGTATAATTTCTCT 644 99 36 Antisense
GCATCCCGGTATAATTTCTCTACAA 119 311 40 Antisense
ATTTCTCTACAAATTTCGTGTCTAC 170 17 53 Antisense
TACAAATTTCGTGTCTACTTCTCCC 167 641 60 Antisense
CTTCTCCCCAATCTTTATCAAATAC 263 221 77 Antisense
CCCCAATCTTTATCAAATACTGGTG 398 261 82 Antisense
ATACTGGTGATTTTAATATATTTGT 572 23 98 Antisense
AATCATGTCAAATCTCATAATGGTG 308 171 152 Antisense
TCTCATAATGGTGTTCTTCTTCTCT 200 613 164 Antisense
Sequence Source Affymetrix Proprietary Database