[Home] | [Total List]

[174838_at]

Description CEK034E8R_rc /REP_DB=TREMBL Accession /GB=D33682 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 27      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 60      6grp_total > 27      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 534.8
(3)
P 		299.4
(-2.3)
P 		266.3
(-3)
P 		465.2
(1.4)
P 		269
B 503.6
(3)
P 		285.2
(-1)
P 		178.8
(-3)
P 		366
(0.5)
P 		325
C 423.8
(3)
P 		339.5
(-1.7)
P 		316.9
(-3)
P 		328.4
(-2.4)
P 		107
avr 487.4
(3) 		308
(-1.6) 		254
(-3) 		386.5
(0.4) 		233

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 493
1 2 3 4 5 6 range
A 691.1
(3)
P 		349.4
(-1.8)
P 		405.6
(-1)
P 		266.4
(-3)
P 		469.6
(-0.1)
P 		326.3
(-2.2)
P 		425
B 584.3
(3)
P 		501.5
(1.2)
P 		304.2
(-3)
P 		414.6
(-0.6)
P 		374.3
(-1.5)
P 		554.3
(2.4)
P 		280
C 480.1
(1.7)
P 		557.3
(3)
P 		383.5
(0.1)
P 		398.3
(0.3)
P 		198.5
(-3)
P 		395.5
(0.3)
P 		359
avr 585.2
(3) 		469.4
(0.1) 		364.4
(-2.6) 		359.8
(-2.7) 		347.5
(-3) 		425.4
(-1) 		238
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 153
1 2 3 4 range
A 194.7
(3)
P 		65
(-3)
P 		69.6
(-2.8)
P 		68.1
(-2.9)
P 		130
B 160.6
(3)
P 		70.4
(-1.5)
P 		41.4
(-3)
P 		78
(-1.2)
P 		119
C 140.3
(3)
P 		97.6
(-0)
P 		110.4
(0.9)
P 		55.4
(-3)
P 		85
avr 165.2
(3) 		77.7
(-2.4) 		73.8
(-2.6) 		67.2
(-3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 127.4
(1.8)
P 		124.3
(1.6)
P 		88.3
(-1.3)
P 		67.6
(-3)
P 		141.7
(3)
P 		79.5
(-2)
P 		74
B 203.3
(2.8)
P 		166.9
(1.2)
P 		73.9
(-3)
P 		109.8
(-1.4)
P 		152.1
(0.5)
P 		206.7
(3)
P 		133
C 178
(3)
P 		170
(2.6)
P 		97.6
(-1.2)
P 		80.1
(-2.2)
P 		64.2
(-3)
P 		132.4
(0.6)
P 		114
avr 169.6
(3) 		153.7
(1.9) 		86.6
(-2.9) 		85.8
(-3) 		119.3
(-0.6) 		139.5
(0.8) 		84
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174838_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20241
Sequence Type Exemplar sequence
Representative Public ID CEK034E8R NCBI
Target Description CEK034E8R_rc /REP_DB=TREMBL Accession /GB=D33682 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK524.4 ENSEMBL cdna:known chromosome:CEL140:I:7468993:7474549:-1 gene:ZK524.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:7468933-7469357(-) 92.69 100.0
Public Domain and Genome References
Ensembl ZK524.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98148 Hypothetical protein ZK524.4 [Caenorhabditis elegans] emb|CAA96698.1| Hypothetical protein ZK524.4 [Caenorhabditis elegans] ref|NP_492097.1| ZK524.4 [Caenorhabditis elegans] 0.0
blast CAE56825 Hypothetical protein CBG24641 [Caenorhabditis briggsae] 0.0
blast EAA01241 ENSANGP00000008479 [Anopheles gambiae str. PEST] ref|XP_321330.2| ENSANGP00000008479 [Anopheles gambiae str. PEST] 1.0E-128
Protein Families
Method ID Description E-Value
ec A2S7_HUMAN (Q96Q40) Serine/threonine-protein kinase ALS2CR7 (EC 2.7.1.37) (Amyotrophic lateral sclerosis 2 chromosomal region candidate gene protein 7) 1.0E-63
hanks 2.2.11 CaMK Group; CaMK II KIN1/SNF1/Nim1; YKL453 6.0E-77
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 8.7E-80
Sequence
Target Sequence 
>C. ELEGANS:174838_AT
gacgtgcttatccaatcagtctacgaactagtttcttcttcgcagaacattcgatttatt
aagtgatctttatagtttatttctccgaatttccagtctttcttcattctttagtcgttt
ctttccggtttcccactttaaaaagttatataatctttttttcagtattttagtcccctc
atatatttcgtttcttttttaaattgccatgttttcaaagccacttcagcatagttctta
tagtgtttttctttctgttttttctctctctctcaatctggtgaccatttttctcaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTGCTTATCCAATCAGTCTACG 509 377 34 Antisense
CAGTCTACGAACTAGTTTCTTCTTC 140 185 50 Antisense
GTTTCTTCTTCGCAGAACATTCGAT 303 449 64 Antisense
TATTTCTCCGAATTTCCAGTCTTTC 138 663 111 Antisense
CAGTCTTTCTTCATTCTTTAGTCGT 614 207 127 Antisense
TTTTTCAGTATTTTAGTCCCCTCAT 491 675 191 Antisense
TTTTAGTCCCCTCATATATTTCGTT 110 667 201 Antisense
TGCCATGTTTTCAAAGCCACTTCAG 43 585 238 Antisense
AAGCCACTTCAGCATAGTTCTTATA 192 149 251 Antisense
GTTCTTATAGTGTTTTTCTTTCTGT 393 443 267 Antisense
CAATCTGGTGACCATTTTTCTCAGA 160 181 307 Antisense
Sequence Source Affymetrix Proprietary Database