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[174837_s_at]

Description CEK031F9R_rc /REP_DB=TREMBL Accession /GB=D33486 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31f9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 33      6grp_high1_10_10 > 32      4grp_high_8_8 > 60      6grp_highest_nonorm > 71      6grp_total > 21      4grp_total > 59      6grp_highest_sub > 02      6grp_high1_sub > 02_03      6grp_total_sub > Hat      6grp_rule_based > S2      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 541
1 2 3 4 range
A 386.8
(1.9)
P 		462
(3)
P 		442.8
(2.7)
P 		50.2
(-3)
M 		412
B 343.4
(0.7)
P 		459.6
(2.1)
P 		533.9
(3)
P 		42.5
(-3)
P 		491
C 410.5
(0.9)
P 		469.2
(1.6)
P 		583.7
(3)
P 		96.3
(-3)
P 		487
avr 380.2
(1.2) 		463.6
(2.3) 		520.1
(3) 		63
(-3) 		457

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 296.3
(-2)
P 		495.5
(3)
P 		388.4
(0.3)
P 		300.5
(-1.9)
P 		254.3
(-3)
P 		254.9
(-3)
P 		241
B 438.3
(1.1)
P 		370.4
(-0.1)
P 		542.6
(3)
P 		340.6
(-0.6)
P 		290.1
(-1.5)
P 		206.4
(-3)
P 		336
C 378.5
(-0.6)
P 		608.2
(3)
P 		454.6
(0.6)
P 		373.6
(-0.7)
P 		236.8
(-2.8)
P 		224.7
(-3)
P 		384
avr 371
(0.3) 		491.4
(3) 		461.9
(2.3) 		338.2
(-0.5) 		260.4
(-2.3) 		228.7
(-3) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 196
1 2 3 4 range
A 140.8
(3)
P 		100.3
(1.2)
P 		115.8
(1.9)
P 		7.4
(-3)
M 		133
B 109.5
(2.3)
P 		113.5
(2.5)
P 		123.7
(3)
P 		9
(-3)
P 		115
C 135.9
(0.8)
P 		134.9
(0.8)
P 		203.4
(3)
P 		16.2
(-3)
P 		187
avr 128.7
(2.2) 		116.2
(1.6) 		147.6
(3) 		10.9
(-3) 		137

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 131
1 2 3 4 5 6 range
A 54.6
(-3)
P 		176.2
(3)
P 		84.6
(-1.5)
P 		76.2
(-1.9)
P 		76.7
(-1.9)
P 		62.1
(-2.6)
P 		122
B 152.5
(3)
P 		123.3
(0.7)
P 		131.8
(1.4)
P 		90.2
(-2)
P 		117.8
(0.2)
P 		77
(-3)
P 		76
C 140.3
(0.5)
P 		185.6
(3)
P 		115.7
(-0.8)
P 		75.1
(-3)
P 		76.6
(-2.9)
P 		75.2
(-3)
P 		111
avr 115.8
(-0) 		161.7
(3) 		110.7
(-0.4) 		80.5
(-2.4) 		90.4
(-1.7) 		71.4
(-3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174837_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21716
Sequence Type Exemplar sequence
Representative Public ID CEK031F9R NCBI
Target Description CEK031F9R_rc /REP_DB=TREMBL Accession /GB=D33486 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31f9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072961(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072961 NCBI Caenorhabditis elegans F21C10.7 (F21C10.7) mRNA, complete cds. 11/11 A 
SNAP00000042378 ENSEMBL cdna:SNAP chromosome:CEL140:V:9115983:9124633:1 11/11 None
GENEFINDER00000042392 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:9115377:9125846:1 11/11 None
F21C10.7 ENSEMBL cdna:known chromosome:CEL140:V:9115377:9124766:1 gene:F21C10.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:9124184-9124752(+) 98.69 100.0
Public Domain and Genome References
Gene Title
Ensembl F21C10.7
Entrez Gene 179292 Entrez gene
SwissProt Q19663 EMBL-EBI
WormBase CE07122 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA97973 Hypothetical protein F21C10.7 [Caenorhabditis elegans] ref|NP_505362.1| F21C10.7 [Caenorhabditis elegans] 0.0
blast CAE72104 Hypothetical protein CBG19196 [Caenorhabditis briggsae] 0.0
blast XP_623653 PREDICTED: similar to zormin [Apis mellifera] 1.0E-77
blast XP_623653 PREDICTED: similar to zormin [Apis mellifera] 1.0E-59
Protein Domains
Database ID Description E-Value
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.38
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.056
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.38
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.056
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.38
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 7.0E-6
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.15
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.4
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.056
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.022
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000042392 1 2612-2634
Sequence
Target Sequence 
>C. ELEGANS:174837_S_AT
gatgggtatcattcactggtgattgtcaaagttgaaggtgccgatagtggtcaattcaca
tgtttggctgaaaatattgctggtgaagcaagaagcacagctgatttagtagttagacca
caaggaacagctccaggaaactacttccatgtaacgaaagtcacacaggagaagcaggca
agcggaacagaaccaacaacaacgagcgcattttcgatcgaaacaccacgacaaagcgaa
atgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGGGTATCATTCACTGGTGATTG 544 407 27 Antisense
TGTCAAAGTTGAAGGTGCCGATAGT 328 557 50 Antisense
GTGGTCAATTCACATGTTTGGCTGA 569 489 73 Antisense
TAGACCACAAGGAACAGCTCCAGGA 654 651 140 Antisense
GCTCCAGGAAACTACTTCCATGTAA 153 299 156 Antisense
CTTCCATGTAACGAAAGTCACACAG 535 219 170 Antisense
GTCACACAGGAGAAGCAGGCAAGCG 19 465 186 Antisense
GCAGGCAAGCGGAACAGAACCAACA 29 311 200 Antisense
ACAACAACGAGCGCATTTTCGATCG 208 113 222 Antisense
ATTTTCGATCGAAACACCACGACAA 290 15 236 Antisense
GAAACACCACGACAAAGCGAAATGC 544 355 246 Antisense
Sequence Source Affymetrix Proprietary Database