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[174836_at]

Description CEK023E7R_rc /REP_DB=TREMBL Accession /GB=D32924 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk23e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 92      6grp_high1_10_10 > 49      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 81      6grp_total > 39      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 250
1 2 3 4 range
A 311.9
(3)
P 		62.3
(-3)
P 		149.9
(-0.9)
P 		81.7
(-2.5)
P 		250
B 172.1
(0.1)
P 		140
(-3)
P 		202.3
(3)
P 		165.4
(-0.6)
P 		62
C 258.8
(3)
P 		171.7
(-0.9)
P 		224.2
(1.4)
P 		125.7
(-3)
P 		133
avr 247.6
(3) 		124.7
(-3) 		192.1
(0.3) 		124.3
(-3) 		123

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 162
1 2 3 4 5 6 range
A 216.1
(0.5)
P 		249.5
(2.7)
P 		173.8
(-2.2)
P 		160.7
(-3)
P 		254.8
(3)
P 		167.2
(-2.6)
P 		94
B 285.4
(1.3)
P 		245.6
(-0.6)
P 		207
(-2.4)
P 		322.2
(3)
P 		193.2
(-3)
P 		259.6
(0.1)
P 		129
C 303.5
(2)
P 		225.5
(-2.1)
P 		208.2
(-3)
P 		226.7
(-2)
P 		262.6
(-0.1)
P 		321.9
(3)
P 		114
avr 268.3
(3) 		240.2
(0.7) 		196.3
(-3) 		236.5
(0.3) 		236.9
(0.4) 		249.6
(1.4) 		72
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 102
1 2 3 4 range
A 113.5
(3)
P 		13.5
(-2.9)
P 		39.2
(-1.4)
P 		12
(-3)
P 		102
B 54.9
(3)
P 		34.6
(-3)
P 		46.9
(0.6)
P 		35.3
(-2.8)
P 		20
C 85.7
(3)
P 		49.4
(-0.4)
P 		78.1
(2.3)
P 		21.2
(-3)
P 		65
avr 84.7
(3) 		32.5
(-2.1) 		54.7
(0.1) 		22.8
(-3) 		62

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 39.8
(-2.8)
P 		88.7
(3)
P 		37.9
(-3)
P 		40.8
(-2.7)
P 		76.9
(1.6)
P 		40.7
(-2.7)
P 		51
B 99.3
(3)
P 		81.8
(0.9)
P 		50.3
(-3)
P 		85.3
(1.3)
P 		78.5
(0.5)
P 		96.8
(2.7)
P 		49
C 112.5
(3)
P 		68.8
(-0.9)
P 		53
(-2.3)
P 		45.6
(-3)
P 		85
(0.5)
P 		107.8
(2.6)
P 		67
avr 83.9
(3) 		79.8
(2.3) 		47.1
(-3) 		57.2
(-1.4) 		80.1
(2.4) 		81.8
(2.7) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174836_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20896
Sequence Type Exemplar sequence
Representative Public ID CEK023E7R NCBI
Target Description CEK023E7R_rc /REP_DB=TREMBL Accession /GB=D32924 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk23e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065451(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065451 NCBI Caenorhabditis elegans T08A11.1 (T08A11.1) mRNA, complete cds. 11/11 None
T08A11.1 ENSEMBL cdna:known chromosome:CEL140:III:4248132:4263018:-1 gene:T08A11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:4248141-4248529(-) 86.6 100.0
Public Domain and Genome References
Gene Title
Ensembl T08A11.1
Entrez Gene 175548 Entrez gene
SwissProt Q9XTE2 EMBL-EBI
WormBase CE16370 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
18346 protein amino acid prenylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8318 protein prenyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA90776 Hypothetical protein T08A11.1 [Caenorhabditis elegans] emb|CAA15982.1| Hypothetical protein T08A11.1 [Caenorhabditis elegans] ref|NP_497852.1| T08A11.1 [Caenorhabditis elegans] 0.0
blast CAE73715 Hypothetical protein CBG21229 [Caenorhabditis briggsae] 0.0
blast CAE73716 Hypothetical protein CBG21230 [Caenorhabditis briggsae] 8.0E-87
Sequence
Target Sequence 
>C. ELEGANS:174836_AT
gattttagccaatttcagttttactaaccccaaaaatttttcttcagtttttttaaattt
atttttatactttttcttagtgtattaatttatttttatctcttattactctcattctat
gtttttttgttgctttaaacattttctaagcaaccttatttccccccacacaccggtcag
gaccgccaccgctagattttgaattttagttgatttttttctttgattgtattatatgtt
tttctcttgttattctatgtcttatttttttccgtattttcgggtgttctcatcatcgtc
gcccgtcgtatttcattcagtattttatgttttcatcggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTTAGCCAATTTCAGTTTTACT 481 429 26 Antisense
TTATCTCTTATTACTCTCATTCTAT 265 681 121 Antisense
CTCATTCTATGTTTTTTTGTTGCTT 635 229 136 Antisense
TTAAACATTTTCTAAGCAACCTTAT 221 683 160 Antisense
ACCGCCACCGCTAGATTTTGAATTT 90 91 207 Antisense
GATTTTTTTCTTTGATTGTATTATA 457 429 237 Antisense
GTTTTTCTCTTGTTATTCTATGTCT 522 449 263 Antisense
TTCTATGTCTTATTTTTTTCCGTAT 388 689 278 Antisense
GTATTTTCGGGTGTTCTCATCATCG 413 453 299 Antisense
CCCGTCGTATTTCATTCAGTATTTT 356 259 327 Antisense
CAGTATTTTATGTTTTCATCGGTTT 530 207 343 Antisense
Sequence Source Affymetrix Proprietary Database