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[174833_at]

Description CEK036E4R_rc /REP_DB=TREMBL Accession /GB=D33812 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36e4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 52      4grp_highest_8_8 > 09      4grp_high_8_8 > 62      6grp_highest_nonorm > 34      6grp_total > 52      4grp_total > 58      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1801
1 2 3 4 range
A 1439.7
(-0.6)
P 		2217
(2)
P 		2508.2
(3)
P 		736.3
(-3)
P 		1772
B 1477.8
(-1.1)
P 		2100.2
(1.3)
P 		2536.8
(3)
P 		1002.9
(-3)
P 		1534
C 1376.2
(-1.1)
P 		2109
(1.7)
P 		2440.5
(3)
P 		881.9
(-3)
P 		1559
avr 1431.2
(-0.9) 		2142.1
(1.7) 		2495.2
(3) 		873.7
(-3) 		1622

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3522
1 2 3 4 5 6 range
A 1597.4
(-2)
P 		2998.6
(1)
P 		3952.2
(3)
P 		2321.2
(-0.5)
P 		1849.8
(-1.5)
P 		1141.4
(-3)
P 		2811
B 1343.3
(-2.6)
P 		2895.3
(0.2)
P 		4476.7
(3)
P 		2624.3
(-0.3)
P 		1588.3
(-2.2)
P 		1141
(-3)
P 		3336
C 1429.8
(-2.7)
P 		2597.2
(-0.6)
P 		4663.2
(3)
P 		2340.6
(-1.1)
P 		1701.2
(-2.2)
P 		1230.5
(-3)
P 		3433
avr 1456.8
(-2.5) 		2830.4
(0.1) 		4364
(3) 		2428.7
(-0.6) 		1713.1
(-2) 		1171
(-3) 		3193
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 743
1 2 3 4 range
A 524.2
(1.6)
P 		481.3
(1.1)
P 		655.7
(3)
P 		107.8
(-3)
P 		548
B 471.2
(1.1)
P 		518.7
(1.9)
P 		587.8
(3)
P 		213.7
(-3)
P 		374
C 455.6
(-0.4)
P 		606.3
(0.9)
P 		850.6
(3)
P 		148.7
(-3)
P 		702
avr 483.7
(0.6) 		535.4
(1.2) 		698
(3) 		156.7
(-3) 		541

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 909
1 2 3 4 5 6 range
A 294.5
(-2.9)
P 		1066.4
(3)
P 		860.7
(1.4)
P 		588.7
(-0.6)
P 		558.2
(-0.9)
P 		277.9
(-3)
P 		789
B 467.4
(-2.6)
P 		963.7
(1.9)
P 		1087.1
(3)
P 		695.1
(-0.6)
P 		645.3
(-1)
P 		425.5
(-3)
P 		662
C 530
(-2.1)
P 		792.5
(-0.1)
P 		1186.9
(3)
P 		470.7
(-2.5)
P 		550.5
(-1.9)
P 		411.9
(-3)
P 		775
avr 430.6
(-2.5) 		940.9
(2.1) 		1044.9
(3) 		584.8
(-1.1) 		584.7
(-1.1) 		371.8
(-3) 		673
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174833_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21668
Sequence Type Exemplar sequence
Representative Public ID CEK036E4R NCBI
Target Description CEK036E4R_rc /REP_DB=TREMBL Accession /GB=D33812 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk36e4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028766(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028766 NCBI Caenorhabditis elegans F46E10.1a (F46E10.1) mRNA, complete cds. 11/11 None
F46E10.1a ENSEMBL cdna:known chromosome:CEL140:V:6527583:6534672:1 gene:F46E10.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179043 3 1 NM_001028766 174833_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:6534291-6534661(+) 100.0 100.0
Public Domain and Genome References
Ensembl F46E10.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAD14712 Hypothetical protein F46E10.1a [Caenorhabditis elegans] ref|NP_001023937.1| F46E10.1a [Caenorhabditis elegans] 0.0
blast CAE71901 Hypothetical protein CBG18959 [Caenorhabditis briggsae] 0.0
blast AAV58865 Hypothetical protein F46E10.1b [Caenorhabditis elegans] ref|NP_001023938.1| F46E10.1b [Caenorhabditis elegans] 0.0
Protein Families
Method ID Description E-Value
ec 4CL1_ARATH (Q42524) 4-coumarate--CoA ligase 1 (EC 6.2.1.12) (4CL 1) (4-coumaroyl-CoA synthase 1) 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR000873 EMBL-EBI AMP-dependent synthetase and ligase 7.7E-123
Sequence
Target Sequence 
>C. ELEGANS:174833_AT
tctcgcctgacacattccaattgcgtgtatatttcgatttatcgtcgtcacttattcctg
ccctctacaaaattttcaaattcttttctctttacgtttcccgtcgtcgccagcccgaca
cttttgtcttctcttctctcaatatttccagcagagtgactaacgagttttcctgttcat
gttccattatatgacgccacatggcatcagttagcatagtgccttagttcctcttcacaa
ccattgccaactttgaatataatttcaactctttcaactacttatatgcaaatttttttg
tctccctcatttatat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCGCCTGACACATTCCAATTGCG 369 611 13 Antisense
GATTTATCGTCGTCACTTATTCCTG 388 429 48 Antisense
CCTGCCCTCTACAAAATTTTCAAAT 242 267 69 Antisense
TTCTCTTCTCTCAATATTTCCAGCA 235 693 141 Antisense
GAGTGACTAACGAGTTTTCCTGTTC 301 401 166 Antisense
AGTTTTCCTGTTCATGTTCCATTAT 187 63 178 Antisense
GACGCCACATGGCATCAGTTAGCAT 149 381 205 Antisense
TTAGCATAGTGCCTTAGTTCCTCTT 568 681 223 Antisense
TCTTCACAACCATTGCCAACTTTGA 589 615 244 Antisense
AACTCTTTCAACTACTTATATGCAA 72 141 279 Antisense
ATTTTTTTGTCTCCCTCATTTATAT 451 15 304 Antisense
Sequence Source Affymetrix Proprietary Database