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[174832_at] hormone sensitive lipase

Description CEK086C2R_rc /REP_DB=TREMBL Accession /GB=D64652 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 19      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 60      6grp_total > 29      4grp_total > 22      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 530.7
(3)
P 		335.4
(-1.9)
P 		292.7
(-3)
P 		500.5
(2.2)
P 		238
B 580.3
(3)
P 		360.1
(-1.5)
P 		285.7
(-3)
P 		562.7
(2.6)
P 		295
C 575.9
(2.9)
P 		394.7
(-1.1)
P 		310.9
(-3)
P 		582.4
(3)
P 		272
avr 562.3
(3) 		363.4
(-1.5) 		296.4
(-3) 		548.5
(2.7) 		266

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 355
1 2 3 4 5 6 range
A 590.2
(3)
P 		418.1
(-0)
P 		246.4
(-3)
P 		337.8
(-1.4)
P 		528.5
(1.9)
P 		359
(-1)
P 		344
B 528.1
(3)
P 		361
(-0.5)
P 		239.8
(-3)
P 		352.9
(-0.6)
P 		346.1
(-0.8)
P 		408.9
(0.5)
P 		288
C 418.9
(2.9)
P 		416.7
(2.8)
P 		348.6
(0.6)
P 		423
(3)
P 		398.3
(2.2)
P 		234.8
(-3)
P 		188
avr 512.4
(3) 		398.6
(0.1) 		278.3
(-3) 		371.2
(-0.6) 		424.3
(0.7) 		334.2
(-1.6) 		234
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 127
1 2 3 4 range
A 193.2
(3)
P 		72.8
(-3)
P 		76.5
(-2.8)
P 		73.3
(-3)
P 		120
B 185.1
(3)
P 		88.9
(-1.9)
P 		66.2
(-3)
P 		119.9
(-0.3)
P 		119
C 190.6
(3)
P 		113.5
(-2)
P 		108.3
(-2.3)
P 		98.2
(-3)
P 		92
avr 189.6
(3) 		91.7
(-2.5) 		83.7
(-3) 		97.1
(-2.2) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 130
1 2 3 4 5 6 range
A 108.8
(0.1)
P 		148.7
(2.4)
P 		53.7
(-3)
P 		85.7
(-1.2)
P 		159.5
(3)
P 		87.4
(-1.1)
P 		106
B 183.7
(3)
P 		120.2
(-0)
P 		58.2
(-3)
P 		93.5
(-1.3)
P 		140.6
(0.9)
P 		152.5
(1.5)
P 		126
C 155.3
(3)
P 		127.2
(0.8)
P 		88.7
(-2.2)
P 		85.1
(-2.5)
P 		128.9
(0.9)
P 		78.6
(-3)
P 		77
avr 149.3
(3) 		132
(1.7) 		66.9
(-3) 		88.1
(-1.5) 		143
(2.5) 		106.2
(-0.1) 		82
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174832_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22055
Sequence Type Exemplar sequence
Representative Public ID CEK086C2R NCBI
Target Description CEK086C2R_rc /REP_DB=TREMBL Accession /GB=D64652 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk86c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076393(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076393 NCBI Caenorhabditis elegans C46C11.1 (C46C11.1) mRNA, complete cds. 11/11 None
C46C11.1 ENSEMBL cdna:known chromosome:CEL140:X:4637306:4643633:1 gene:C46C11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:4643288-4643617(+) 97.92 97.92
Public Domain and Genome References
Gene Title hormone sensitive lipase
Ensembl C46C11.1
Entrez Gene 180737 Entrez gene
SwissProt Q966P1 EMBL-EBI
WormBase CE27859 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1582806_AT lipase, hormone-sensitive cfa
CANINE_2:CFA.17623.1.S1_AT lipase, hormone-sensitive cfa
CANINE_2:CFA.3468.1.S1_S_AT lipase, hormone-sensitive cfa
DROSOPHILA_2:1639384_S_AT dm
DROSGENOME1:154767_AT dm
HG-U133_PLUS_2:208186_S_AT lipase, hormone-sensitive hs
HG-U133A:208186_S_AT lipase, hormone-sensitive hs
HG-U133A_2:208186_S_AT lipase, hormone-sensitive hs
HG-FOCUS:208186_S_AT lipase, hormone-sensitive hs
HG-U133_PLUS_2:213855_S_AT lipase, hormone-sensitive hs
HG-U133A_2:213855_S_AT lipase, hormone-sensitive hs
HG-U133A:213855_S_AT lipase, hormone-sensitive hs
HG-U95AV2:38320_S_AT lipase, hormone-sensitive hs
HU35KSUBA:U40002_S_AT lipase, hormone-sensitive hs
HUGENEFL:U40002_S_AT lipase, hormone-sensitive hs
HU35KSUBD:RC_H50238_S_AT lipase, hormone-sensitive hs
U133_X3P:G4885450_3P_A_AT lipase, hormone-sensitive hs
U133_X3P:HS.95351.1.A1_3P_A_AT lipase, hormone-sensitive hs
HG-U95AV2:38321_R_AT lipase, hormone-sensitive hs
HG-U133_PLUS_2:241904_AT Lipase, hormone-sensitive hs
HG-U133B:241904_AT Lipase, hormone-sensitive hs
HG-U95E:71592_AT Lipase, hormone-sensitive hs
U133_X3P:HS.220721.0.S1_3P_AT Lipase, hormone-sensitive hs
MU11KSUBA:U08188_S_AT lipase, hormone sensitive mm
MG-U74AV2:103083_AT lipase, hormone sensitive mm
MG-U74CV2:171050_AT lipase, hormone sensitive mm
MOE430A:1422820_AT lipase, hormone sensitive mm
MOUSE430A_2:1422820_AT lipase, hormone sensitive mm
MOUSE430_2:1422820_AT lipase, hormone sensitive mm
MU19KSUBB:TC30758_AT Lipase, hormone sensitive, mRNA (cDNA clone MGC:13927 IMAGE:4188567) mm
MU19KSUBB:TC30758_G_AT Lipase, hormone sensitive, mRNA (cDNA clone MGC:13927 IMAGE:4188567) mm
RG-U34A:X51415CDS_S_AT lipase, hormone sensitive rn
RG-U34A:U40001_AT lipase, hormone sensitive rn
RG-U34C:RC_AI236589_AT lipase, hormone sensitive rn
RAE230A:1387132_AT lipase, hormone sensitive rn
RAT230_2:1387132_AT lipase, hormone sensitive rn
RAE230B:1382465_AT lipase, hormone sensitive rn
RAT230_2:1382465_AT lipase, hormone sensitive rn
RAE230B:1392187_AT Lipase, hormone sensitive rn
RAT230_2:1392187_AT Lipase, hormone sensitive rn
RG-U34C:RC_AI176967_AT Lipase, hormone sensitive rn
Protein Similarities
Method ID Description E-Value
blast NP_508794 C46C11.1 [Caenorhabditis elegans] gb|AAK68253.1| Hypothetical protein C46C11.1 [Caenorhabditis elegans] 0.0
blast CAE68625 Hypothetical protein CBG14512 [Caenorhabditis briggsae] 0.0
blast AAM68400 CG11055-PC, isoform C [Drosophila melanogaster] gb|AAF57495.1| CG11055-PB, isoform B [Drosophila melanogaster] gb|AAF57494.1| CG11055-PA, isoform A [Drosophila melanogaster] ref|NP_725942.1| CG11055-PC, isoform C [Drosophila melanogaster] ref|NP_725941.1| CG11055-PA, isoform A [Drosophila melanogaster] ref|NP_611463.1| CG11055-PB, isoform B [Drosophila melanogaster] gb|AAO24955.1| RE52776p [Drosophila melanogaster] 7.0E-99
Protein Domains
Database ID Description E-Value
Pfam IPR010468 EMBL-EBI Hormone-sensitive lipase, N-terminal 1.1E-15
Sequence
Target Sequence 
>C. ELEGANS:174832_AT
aatcctattttagcaatttggcattttctagtacaagtaacgttagtatcaagggttata
acctatagcattcggtcatttgtgtcaaaatctgtgaatttaagtttcatcggaggcacc
gcagaatgatacgtgtattatgattttattgatacccccttccccaacatctctttttat
tccaatggcttttattgtcgcctcatttctgagtacagttcactgccatagttcctgttt
catgggttttttgtttgcaattatttctttcccccttcaacaccttcagcaatatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATCCTATTTTAGCAATTTGGCATT 33 169 22 Antisense
TATAGCATTCGGTCATTTGTGTCAA 90 661 85 Antisense
ATTTAAGTTTCATCGGAGGCACCGC 406 15 119 Antisense
GAGGCACCGCAGAATGATACGTGTA 236 405 134 Antisense
TTATGATTTTATTGATACCCCCTTC 179 681 159 Antisense
ACATCTCTTTTTATTCCAATGGCTT 648 105 188 Antisense
CAATGGCTTTTATTGTCGCCTCATT 322 183 204 Antisense
GTCGCCTCATTTCTGAGTACAGTTC 565 475 218 Antisense
GTACAGTTCACTGCCATAGTTCCTG 386 461 234 Antisense
TAGTTCCTGTTTCATGGGTTTTTTG 157 653 250 Antisense
CCCTTCAACACCTTCAGCAATATTA 471 259 294 Antisense
Sequence Source Affymetrix Proprietary Database