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[174831_at]

Description CEK041E7R_rc /REP_DB=TREMBL Accession /GB=D34138 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41e7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 50      4grp_high_8_8 > 40      6grp_highest_nonorm > 02      6grp_total > 18      4grp_total > 55      6grp_highest_sub > De      6grp_cgc > 12      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2037
1 2 3 4 range
A 3511
(3)
P 		1692.5
(-2.5)
P 		2112.4
(-1.2)
P 		1509.6
(-3)
P 		2001
B 3268.9
(3)
P 		1980.6
(-1.5)
P 		1776.2
(-2.2)
P 		1548.1
(-3)
P 		1721
C 2859
(3)
P 		1816.2
(-1.5)
P 		1759
(-1.8)
P 		1474.3
(-3)
P 		1385
avr 3213
(3) 		1829.8
(-1.9) 		1882.5
(-1.7) 		1510.7
(-3) 		1702

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2281
1 2 3 4 5 6 range
A 3906.7
(3)
P 		2729.7
(-0.1)
P 		1634.1
(-3)
P 		1831
(-2.5)
P 		2271.1
(-1.3)
P 		2066.4
(-1.9)
P 		2273
B 3844.5
(3)
P 		2307.3
(-1.5)
P 		1792.8
(-3)
P 		2400.6
(-1.2)
P 		2100
(-2.1)
P 		1779.9
(-3)
P 		2065
C 3915.1
(3)
P 		2871.7
(0.2)
P 		2560.3
(-0.6)
P 		1680.5
(-3)
P 		2240.4
(-1.5)
P 		1988.7
(-2.2)
P 		2235
avr 3888.8
(3) 		2636.2
(-0.9) 		1995.7
(-2.8) 		1970.7
(-2.9) 		2203.8
(-2.2) 		1945
(-3) 		1944
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1057
1 2 3 4 range
A 1278.3
(3)
P 		367.4
(-2.2)
P 		552.2
(-1.1)
P 		221
(-3)
P 		1057
B 1042.4
(3)
P 		489.2
(-1.7)
P 		411.6
(-2.3)
P 		329.9
(-3)
P 		713
C 946.4
(3)
P 		522.2
(-0.6)
P 		613.1
(0.1)
P 		248.6
(-3)
P 		698
avr 1089
(3) 		459.6
(-1.6) 		525.6
(-1.1) 		266.5
(-3) 		823

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1113
1 2 3 4 5 6 range
A 720.2
(0.6)
P 		970.8
(3)
P 		355.9
(-3)
P 		464.4
(-1.9)
P 		685.3
(0.2)
P 		503.1
(-1.6)
P 		615
B 1337.7
(3)
P 		768
(-0.8)
P 		435.4
(-3)
P 		635.8
(-1.7)
P 		853.2
(-0.2)
P 		663.7
(-1.5)
P 		902
C 1451.2
(3)
P 		876.2
(-0.1)
P 		651.6
(-1.3)
P 		337.9
(-3)
P 		724.9
(-0.9)
P 		665.7
(-1.2)
P 		1113
avr 1169.7
(3) 		871.7
(0.4) 		481
(-3) 		479.4
(-3) 		754.5
(-0.6) 		610.8
(-1.9) 		690
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174831_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20278
Sequence Type Exemplar sequence
Representative Public ID CEK041E7R NCBI
Target Description CEK041E7R_rc /REP_DB=TREMBL Accession /GB=D34138 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk41e7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061199 NCBI Caenorhabditis elegans FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-1) (frm-1) mRNA, complete cds. 11/11 None
ZK270.2a.1 ENSEMBL cdna:known chromosome:CEL140:I:14883882:14905487:-1 gene:ZK270.2 11/11 A 
ZK270.2a.2 ENSEMBL cdna:known chromosome:CEL140:I:14883882:14905485:-1 gene:ZK270.2 11/11 A 
ZK270.2a.3 ENSEMBL cdna:known chromosome:CEL140:I:14883902:14905924:-1 gene:ZK270.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173360 4 1 NM_061199 174831_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14883822-14884441(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK270.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD91717 Hypothetical protein ZK270.2e [Caenorhabditis elegans] emb|CAD91628.1| Hypothetical protein ZK270.2e [Caenorhabditis elegans] ref|NP_001021866.1| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-1) [Caenorhabditis elegans] 0.0
blast CAB05003 Hypothetical protein ZK270.2a [Caenorhabditis elegans] emb|CAB04090.2| Hypothetical protein ZK270.2a [Caenorhabditis elegans] ref|NP_493600.2| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-1) [Caenorhabditis elegans] 0.0
blast CAB54513 Hypothetical protein ZK270.2d [Caenorhabditis elegans] emb|CAB54224.2| Hypothetical protein ZK270.2d [Caenorhabditis elegans] ref|NP_493601.2| FERM domain (protein4.1-ezrin-radixin-moesin) family member (frm-1) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000299 EMBL-EBI Band 4.1 1.1E-39
Pfam IPR000299 EMBL-EBI Band 4.1 3.4E-10
Pfam IPR008379 EMBL-EBI 4.1, C-terminal 2.2E-42
Sequence
Target Sequence 
>C. ELEGANS:174831_AT
cccattcccatcctaaaagtcgttgtgtttctttttatctacttttacttcccctgtttt
atggtttaaattgcgaacgacacccctcaatatttttttttcaaaattcgaaatattatc
cgaaacttcgcaaatctagcttaatcgttcccattctatttcgaaattcccgcattcttc
aaactggctacccgataccatgcgcgcgtaacacatttcttctctgatttaattggtttt
ttcttattctgagcctattttttctggagaggtcccgcttaaagtagctctttttaagat
tttttctaaaaaatttttattcgaaatcgaattacctttttctatcgttatcaaaatgtt
tctattgtattctggtgttgctccaaagttgttttcaacctccgttcggagacgcaactt
tcgatgctttaaatttttttttcttattttctgcttttgtcaattatctgctacgaatta
cccaatga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCATTCCCATCCTAAAAGTCGTTG 468 257 65 Antisense
TTTAAATTGCGAACGACACCCCTCA 707 657 129 Antisense
GAAACTTCGCAAATCTAGCTTAATC 300 357 186 Antisense
TAGCTTAATCGTTCCCATTCTATTT 644 651 201 Antisense
TTCGAAATTCCCGCATTCTTCAAAC 367 693 224 Antisense
TCAAACTGGCTACCCGATACCATGC 405 629 243 Antisense
TTCTATTGTATTCTGGTGTTGCTCC 330 691 424 Antisense
GCTCCAAAGTTGTTTTCAACCTCCG 709 297 444 Antisense
CTCCGTTCGGAGACGCAACTTTCGA 149 233 464 Antisense
TTTCTTATTTTCTGCTTTTGTCAAT 533 671 504 Antisense
TTATCTGCTACGAATTACCCAATGA 609 679 528 Antisense
Sequence Source Affymetrix Proprietary Database