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[174830_at]

Description CEK031B6R_rc /REP_DB=TREMBL Accession /GB=D33450 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31b6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 0      6grp_high1_10_10 > 08      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 51      6grp_total > 09      4grp_total > 14      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 685
1 2 3 4 range
A 780.3
(3)
P 		198.2
(-3)
P 		254.7
(-2.4)
P 		721
(2.4)
P 		582
B 655.2
(1.3)
P 		270.5
(-2.5)
P 		222.6
(-3)
P 		823.3
(3)
P 		601
C 739.3
(1.7)
P 		265.2
(-2.7)
P 		229.7
(-3)
P 		883.4
(3)
P 		654
avr 724.9
(2.1) 		244.6
(-2.9) 		235.7
(-3) 		809.2
(3) 		574

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 512
1 2 3 4 5 6 range
A 716.6
(3)
P 		566.7
(-0)
P 		424.7
(-2.9)
P 		635.6
(1.4)
P 		668.4
(2)
P 		418.2
(-3)
P 		298
B 676.9
(1.1)
P 		523.5
(-0.7)
P 		326.8
(-3)
P 		838.4
(3)
P 		504.1
(-0.9)
P 		363.8
(-2.6)
P 		512
C 713.4
(3)
P 		565.8
(-0.3)
P 		516.6
(-1.5)
P 		557.8
(-0.5)
P 		520.5
(-1.4)
P 		448.6
(-3)
P 		265
avr 702.3
(3) 		552
(-0.1) 		422.7
(-2.7) 		677.3
(2.5) 		564.3
(0.2) 		410.2
(-3) 		292
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 241
1 2 3 4 range
A 284.1
(3)
P 		43
(-3)
P 		66.6
(-2.4)
P 		105.5
(-1.4)
P 		241
B 208.9
(3)
P 		66.8
(-2.4)
P 		51.6
(-3)
P 		175.5
(1.7)
P 		157
C 244.7
(3)
P 		76.2
(-3)
P 		80
(-2.9)
P 		149
(-0.4)
P 		169
avr 245.9
(3) 		62
(-3) 		66.1
(-2.9) 		143.3
(-0.3) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 185
1 2 3 4 5 6 range
A 132.1
(-0.8)
P 		201.6
(3)
P 		92.5
(-3)
P 		161.2
(0.8)
P 		201.7
(3)
P 		101.8
(-2.5)
P 		109
B 235.5
(3)
P 		174.3
(0.6)
P 		79.3
(-3)
P 		222.1
(2.5)
P 		204.8
(1.8)
P 		135.6
(-0.8)
P 		156
C 264.4
(3)
P 		172.7
(-0.6)
P 		131.5
(-2.2)
P 		112.2
(-3)
P 		168.4
(-0.8)
P 		150.2
(-1.5)
P 		152
avr 210.7
(3) 		182.9
(1.5) 		101.1
(-3) 		165.2
(0.5) 		191.6
(2) 		129.2
(-1.5) 		110
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174830_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22157
Sequence Type Exemplar sequence
Representative Public ID CEK031B6R NCBI
Target Description CEK031B6R_rc /REP_DB=TREMBL Accession /GB=D33450 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31b6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076482(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076482 NCBI Caenorhabditis elegans Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-62) (pqn-62) mRNA, complete cds. 11/11 None
T03G11.1 ENSEMBL cdna:known chromosome:CEL140:X:5197750:5204207:1 gene:T03G11.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5203816-5204190(+) 98.94 98.94
Public Domain and Genome References
Gene Title
Gene Symbol pqn-62
Ensembl T03G11.1
Entrez Gene 180789 Entrez gene
SwissProt Q22126 EMBL-EBI
WormBase CE31226 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508883 Prion-like-(Q/N-rich)-domain-bearing protein family member (pqn-62) [Caenorhabditis elegans] gb|AAA82452.4| Prion-like-(q/n-rich)-domain-bearing protein protein 62 [Caenorhabditis elegans] 0.0
blast CAE68711 Hypothetical protein CBG14636 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003034 EMBL-EBI DNA-binding SAP 1.0E-4
Sequence
Target Sequence 
>C. ELEGANS:174830_AT
aataataattcctccttgcatttccaaacctgtaaaaactttccaaaaaagaaaactttc
ccaaaaaatttgttccagtctataaaaatattccttcttccacgattcccaaatttattc
cggtttttcttatgttccatagctcaatagtgttcatgctcttcttgcaactagattact
ttctaccgtgcaaaatagttttgttcagtatattccacattcctatcaattccatcccaa
aacattcaatatctactactatttctttccatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAATAATTCCTCCTTGCATTTCC 662 169 77 Antisense
CTCCTTGCATTTCCAAACCTGTAAA 254 235 88 Antisense
TAAAAATATTCCTTCTTCCACGATT 255 641 159 Antisense
TCCACGATTCCCAAATTTATTCCGG 205 585 175 Antisense
TATTCCGGTTTTTCTTATGTTCCAT 330 665 192 Antisense
ATGTTCCATAGCTCAATAGTGTTCA 185 45 208 Antisense
AGTGTTCATGCTCTTCTTGCAACTA 612 59 225 Antisense
GCAACTAGATTACTTTCTACCGTGC 3 319 243 Antisense
TATTCCACATTCCTATCAATTCCAT 116 665 287 Antisense
TTCCATCCCAAAACATTCAATATCT 96 701 306 Antisense
TATCTACTACTATTTCTTTCCATTA 302 659 326 Antisense
Sequence Source Affymetrix Proprietary Database