[Home] | [Total List]

[174829_at]

Description CEK019A4R_rc /REP_DB=TREMBL Accession /GB=D32579 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19a4 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 08      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_total > 18      4grp_total > 31      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 208.1
(3)
P 		78.9
(-3)
P 		97.1
(-2.2)
P 		197
(2.5)
P 		129
B 213.2
(3)
P 		122.8
(-1.6)
P 		96.1
(-3)
P 		139.1
(-0.8)
P 		117
C 198.5
(3)
P 		102.4
(-2.7)
P 		98.1
(-3)
P 		150.1
(0.1)
P 		100
avr 206.6
(3) 		101.4
(-2.8) 		97.1
(-3) 		162.1
(0.6) 		110

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 182
1 2 3 4 5 6 range
A 145.5
(1.3)
P 		137
(0.7)
P 		87.6
(-3)
P 		131.7
(0.3)
P 		168.7
(3)
P 		138.1
(0.7)
P 		81
B 201.1
(3)
P 		78.8
(-3)
P 		143
(0.1)
P 		125.4
(-0.7)
P 		116.5
(-1.2)
P 		144.3
(0.2)
P 		122
C 260.7
(3)
P 		104.8
(-2.1)
P 		109.4
(-2)
P 		78.8
(-3)
A 		133.3
(-1.2)
P 		99.9
(-2.3)
P 		182
avr 202.4
(3) 		106.9
(-3) 		113.3
(-2.6) 		112
(-2.7) 		139.5
(-1) 		127.4
(-1.7) 		96
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 59
1 2 3 4 range
A 75.8
(3)
P 		17.1
(-3)
P 		25.4
(-2.2)
P 		28.8
(-1.8)
P 		59
B 68
(3)
P 		30.3
(-1.9)
P 		22.3
(-3)
P 		29.6
(-2)
P 		46
C 65.7
(3)
P 		29.4
(-2.4)
P 		34.2
(-1.7)
P 		25.3
(-3)
P 		40
avr 69.8
(3) 		25.6
(-3) 		27.3
(-2.8) 		27.9
(-2.7) 		44

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 81
1 2 3 4 5 6 range
A 26.8
(-1.5)
P 		48.7
(2.6)
P 		19.1
(-3)
P 		33.4
(-0.3)
P 		50.9
(3)
P 		33.6
(-0.3)
P 		32
B 70
(3)
P 		26.2
(-3)
P 		34.7
(-1.8)
P 		33.2
(-2)
P 		47.3
(-0.1)
P 		53.8
(0.8)
P 		44
C 96.6
(3)
P 		32
(-1.8)
P 		27.9
(-2.1)
P 		15.9
(-3)
A 		43.1
(-1)
P 		33.4
(-1.7)
P 		81
avr 64.5
(3) 		35.6
(-1.6) 		27.2
(-3) 		27.5
(-3) 		47.1
(0.2) 		40.3
(-0.9) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174829_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20639
Sequence Type Exemplar sequence
Representative Public ID CEK019A4R NCBI
Target Description CEK019A4R_rc /REP_DB=TREMBL Accession /GB=D32579 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk19a4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063563
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK1067.2 ENSEMBL cdna:known chromosome:CEL140:II:9215146:9222764:1 gene:ZK1067.2 A 
NM_063563 NCBI Caenorhabditis elegans ZK1067.2 (ZK1067.2) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9222705-9223033(+) 92.38 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK1067.2
Entrez Gene 174463 Entrez gene
SwissProt Q23388 EMBL-EBI
WormBase CE06677 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1583846_AT similar to Protein KIAA1404 cfa
CANINE_2:CFA.12314.1.A1_AT similar to Protein KIAA1404 cfa
CANINE_2:CFA.19621.1.S1_AT similar to Protein KIAA1404 cfa
CANINE_2:CFA.19621.1.S1_S_AT similar to Protein KIAA1404 cfa
CANINE_2:CFAAFFX.17756.1.S1_S_AT similar to Protein KIAA1404 cfa
DROSOPHILA_2:1634117_AT dm
DROSGENOME1:152790_AT dm
CHICKEN:GGAAFFX.26344.1.S1_AT similar to Protein KIAA1404 gga
CHICKEN:GGAAFFX.26344.3.S1_S_AT similar to Protein KIAA1404 gga
HG-U133B:225076_S_AT KIAA1404 protein hs
HG-U133_PLUS_2:225076_S_AT KIAA1404 protein hs
HU35KSUBA:AA148581_AT KIAA1404 protein hs
HU35KSUBA:HUM_ALU_AT KIAA1404 protein hs
HU35KSUBB:HUM_ALU_AT KIAA1404 protein hs
HU35KSUBC:HUM_ALU_AT KIAA1404 protein hs
HU35KSUBD:HUM_ALU_AT KIAA1404 protein hs
HUGENEFL:HUM_ALU_AT KIAA1404 protein hs
HC-G110:HUM_ALU_AT KIAA1404 protein hs
HU35KSUBC:RC_AA478774_AT KIAA1404 protein hs
HU35KSUBD:RC_W72798_AT KIAA1404 protein hs
U133_X3P:HS.200317.1.A1_3P_A_AT KIAA1404 protein hs
HG-U95B:49903_AT KIAA1404 protein hs
HG-U95C:63794_AT KIAA1404 protein hs
HG-U95D:70826_AT KIAA1404 protein hs
MU11KSUBA:AA221907_S_AT expressed sequence AI481105 mm
MG-U74AV2:102965_AT expressed sequence AI481105 mm
MOE430A:1427091_AT expressed sequence AI481105 mm
MOUSE430A_2:1427091_AT expressed sequence AI481105 mm
MOUSE430_2:1427091_AT expressed sequence AI481105 mm
MU19KSUBA:TC19951_AT Expressed sequence AI481105, mRNA (cDNA clone IMAGE:5252426) mm
MU19KSUBA:TC25631_AT Expressed sequence AI481105, mRNA (cDNA clone IMAGE:5252426) mm
RAE230A:1373197_AT Similar to Ab1-133 (predicted) rn
RAT230_2:1373197_AT Similar to Ab1-133 (predicted) rn
RAE230A:1375044_AT Similar to Ab1-133 (predicted) rn
RAT230_2:1375044_AT Similar to Ab1-133 (predicted) rn
RAE230B:1396265_AT Similar to Ab1-133 (predicted) rn
RAT230_2:1396265_AT Similar to Ab1-133 (predicted) rn
RG-U34C:RC_AI073208_AT Similar to Ab1-133 (predicted) rn
RG-U34C:RC_AI101455_AT Similar to Ab1-133 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
4197 cysteine-type endopeptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAA93884 Hypothetical protein ZK1067.2 [Caenorhabditis elegans] ref|NP_495964.1| ZK1067.2 [Caenorhabditis elegans] 0.0
blast CAE57867 Hypothetical protein CBG00906 [Caenorhabditis briggsae] 0.0
blast AAP92542 Ab1-133 [Rattus norvegicus] ref|XP_230878.3| PREDICTED: similar to Ab1-133 [Rattus norvegicus] 1.0E-130
Sequence
Target Sequence 
>C. ELEGANS:174829_AT
cttttcatatcaacgttttaactgtaaatttaagtgagctggtacattttccttaacact
tttttggatgtggattccttgagatttcgattgagaaaaattgaaattcagttactattt
attttttcaatattcccaccgaaatcttcagaaatcgtatcccagaaaaaacgtgtcctc
tacccctctttttactcgggttttattgcattggcgctccatctcgtttcgacgcgcgta
atttgtttttgaattcagcaggacccccgaatctctccctcacacttgttttatatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTTTCATATCAACGTTTTAACTGT 142 221 13 Antisense
AACACTTTTTTGGATGTGGATTCCT 555 135 67 Antisense
GTGGATTCCTTGAGATTTCGATTGA 81 491 82 Antisense
GAAATCTTCAGAAATCGTATCCCAG 396 363 153 Antisense
GTATCCCAGAAAAAACGTGTCCTCT 33 455 169 Antisense
TCTTTTTACTCGGGTTTTATTGCAT 197 615 199 Antisense
TCGGGTTTTATTGCATTGGCGCTCC 51 607 208 Antisense
ATCTCGTTTCGACGCGCGTAATTTG 204 23 233 Antisense
TCGACGCGCGTAATTTGTTTTTGAA 190 601 241 Antisense
TGTTTTTGAATTCAGCAGGACCCCC 275 559 256 Antisense
CTCTCCCTCACACTTGTTTTATATT 565 231 285 Antisense
Sequence Source Affymetrix Proprietary Database