[Home] | [Total List]

[174828_at]

Description CEK085E1R_rc /REP_DB=TREMBL Accession /GB=D72013 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk85e1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 79      4grp_highest_8_8 > 03      4grp_high_8_8 > 46      6grp_highest_nonorm > 79      6grp_total > 89      4grp_total > 42      6grp_highest_sub > Da      6grp_cgc > 59      6grp_high1_sub > Cu      6grp_cgc_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 607
1 2 3 4 range
A 1449.3
(-2.6)
P 		2013.6
(3)
P 		1610.9
(-1)
P 		1406.2
(-3)
P 		607
B 1469.8
(-3)
P 		1585.7
(-0.7)
P 		1775
(3)
P 		1621.9
(-0)
P 		305
C 1564.5
(-3)
P 		1794.6
(3)
P 		1717.5
(1)
P 		1676.1
(-0.1)
P 		230
avr 1494.5
(-3) 		1798
(3) 		1701.1
(1.1) 		1568.1
(-1.5) 		304

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1447
1 2 3 4 5 6 range
A 1449.7
(-1.6)
P 		1693.6
(-0.5)
P 		1414
(-1.8)
P 		1153.9
(-3)
P 		2083.5
(1.3)
P 		2457.6
(3)
P 		1304
B 1552.5
(-2)
P 		1570.9
(-1.9)
P 		1342.6
(-3)
P 		1384.2
(-2.8)
P 		1709.1
(-1.3)
P 		2601
(3)
P 		1258
C 1558.8
(-1.6)
P 		1366.5
(-2.5)
P 		1540.2
(-1.7)
P 		1256.5
(-3)
P 		2448.4
(2.5)
P 		2553.7
(3)
P 		1297
avr 1520.3
(-1.8) 		1543.7
(-1.7) 		1432.3
(-2.2) 		1264.9
(-3) 		2080.3
(0.8) 		2537.4
(3) 		1273
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 393
1 2 3 4 range
A 527.7
(3)
P 		437.1
(1.3)
P 		421.1
(1)
P 		205.8
(-3)
P 		322
B 468.7
(3)
P 		391.6
(-0.8)
P 		411.3
(0.2)
P 		345.6
(-3)
P 		123
C 517.9
(1.5)
P 		516
(1.4)
P 		598.6
(3)
P 		282.6
(-3)
P 		316
avr 504.8
(3) 		448.2
(1.5) 		477
(2.3) 		278
(-3) 		227

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 717
1 2 3 4 5 6 range
A 267.2
(-3)
P 		602.3
(2.6)
P 		307.9
(-2.3)
P 		292.7
(-2.6)
P 		628.7
(3)
P 		598.4
(2.5)
P 		362
B 540.2
(-1)
P 		522.9
(-1.2)
P 		326
(-3)
P 		366.6
(-2.6)
P 		694.4
(0.4)
P 		969.9
(3)
P 		644
C 577.8
(0.2)
P 		417
(-1.4)
P 		392
(-1.6)
P 		252.7
(-3)
P 		792.3
(2.4)
P 		854.9
(3)
P 		602
avr 461.7
(-1.1) 		514.1
(-0.5) 		342
(-2.5) 		304
(-3) 		705.1
(1.8) 		807.7
(3) 		504
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174828_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20934
Sequence Type Exemplar sequence
Representative Public ID CEK085E1R NCBI
Target Description CEK085E1R_rc /REP_DB=TREMBL Accession /GB=D72013 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk85e1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C07H6.5.2 ENSEMBL cdna:known chromosome:CEL140:III:7495089:7497753:-1 gene:C07H6.5 11/11 None
C07H6.5.1 ENSEMBL cdna:known chromosome:CEL140:III:7495089:7497751:-1 gene:C07H6.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7495243-7495680(-) 100.0 100.0
Public Domain and Genome References
Ensembl C07H6.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85443 Conserved germline helicase protein 1 [Caenorhabditis elegans] ref|NP_498646.1| Conserved Germline Helicase family member (cgh-1) [Caenorhabditis elegans] 0.0
blast CAE64461 Hypothetical protein CBG09177 [Caenorhabditis briggsae] 0.0
blast XP_624586 PREDICTED: similar to CG4916-PA, isoform A [Apis mellifera] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 3.3E-32
Pfam IPR001410 EMBL-EBI DEAD/DEAH box helicase 5.4E-72
Sequence
Target Sequence 
>C. ELEGANS:174828_AT
gcaccacattgatcaatcttgtaatttcctatctcatttcccacaattctcccttcatgc
cccataccaatgcatccaaaatttaaaaccaccatccttgcggttttcccttgcccatct
gtagggttttattccgctcttgtgctcattccagttcaacttgtccatctcctaatctga
tagatatttattgcaactattatcatgtcaaatggctcaaagactataatgtcttggaag
gcttccggctggccatgtgtctcgcttacagctcttcccccatccccattccaaaaccat
ttgttctctcccgcctcctccctcttgtttattgtataatttgtagaagttgacaccaaa
aatttgcacaatttttcgattcacaaaggatgtgcaagcttccttct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCACATTGATCAATCTTGTAAT 346 315 13 Antisense
AATCTTGTAATTTCCTATCTCATTT 198 171 27 Antisense
CATACCAATGCATCCAAAATTTAAA 600 211 75 Antisense
TTCCCTTGCCCATCTGTAGGGTTTT 106 693 118 Antisense
CTGTAGGGTTTTATTCCGCTCTTGT 432 45 131 Antisense
ATTTATTGCAACTATTATCATGTCA 485 15 198 Antisense
ACTATTATCATGTCAAATGGCTCAA 80 103 208 Antisense
CATCCCCATTCCAAAACCATTTGTT 222 209 293 Antisense
TTCCAAAACCATTTGTTCTCTCCCG 442 699 301 Antisense
TCCTCCCTCTTGTTTATTGTATAAT 629 593 328 Antisense
ACAAAGGATGTGCAAGCTTCCTTCT 511 111 395 Antisense
Sequence Source Affymetrix Proprietary Database