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[174826_at]

Description CEK018E8R_rc /REP_DB=TREMBL Accession /GB=D32546 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 17      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 01      6grp_total > 16      4grp_total > 23      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2488
1 2 3 4 range
A 4094.4
(3)
P 		1833.2
(-3)
P 		1956.9
(-2.7)
P 		2724.5
(-0.6)
P 		2261
B 3189.5
(2.3)
P 		2183.7
(-1.1)
P 		1606.9
(-3)
P 		3407.8
(3)
P 		1801
C 3593
(3)
P 		2233.1
(-2.2)
P 		2009
(-3)
P 		3376.8
(2.2)
P 		1584
avr 3625.6
(3) 		2083.3
(-2.2) 		1857.6
(-3) 		3169.7
(1.5) 		1768

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1966
1 2 3 4 5 6 range
A 2596.1
(3)
P 		2123.4
(0.9)
P 		1621.2
(-1.4)
P 		1266.7
(-3)
P 		1716.4
(-1)
P 		1791.7
(-0.6)
P 		1329
B 3193.7
(3)
P 		2321.3
(0.3)
P 		1336.9
(-2.7)
P 		1694
(-1.6)
P 		1561.1
(-2)
P 		1227.8
(-3)
P 		1966
C 3133.9
(3)
P 		2264.7
(-0.3)
P 		1761.9
(-2.2)
P 		1538.2
(-3)
P 		1594.2
(-2.8)
P 		1746.2
(-2.2)
P 		1596
avr 2974.6
(3) 		2236.5
(-0) 		1573.3
(-2.7) 		1499.6
(-3) 		1623.9
(-2.5) 		1588.6
(-2.6) 		1475
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1118
1 2 3 4 range
A 1490.8
(3)
P 		397.9
(-3)
P 		511.6
(-2.4)
P 		398.8
(-3)
P 		1093
B 1017.1
(3)
P 		539.3
(-1.4)
P 		372.4
(-3)
P 		726.2
(0.3)
P 		645
C 1189.4
(3)
P 		642
(-2.3)
P 		700.2
(-1.7)
P 		569.4
(-3)
P 		620
avr 1232.4
(3) 		526.4
(-3) 		528.1
(-3) 		564.8
(-2.7) 		706

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 852
1 2 3 4 5 6 range
A 478.6
(-0.8)
P 		755.2
(3)
P 		353.1
(-2.6)
P 		321.3
(-3)
P 		517.9
(-0.3)
P 		436.2
(-1.4)
P 		434
B 1111.3
(3)
P 		772.7
(0.4)
P 		324.6
(-3)
P 		448.7
(-2.1)
P 		634.2
(-0.6)
P 		457.8
(-2)
P 		787
C 1161.6
(3)
P 		691
(-0.3)
P 		448.4
(-2)
P 		309.3
(-3)
P 		515.9
(-1.5)
P 		584.6
(-1.1)
P 		852
avr 917.2
(3) 		739.6
(1.1) 		375.4
(-2.8) 		359.8
(-3) 		556
(-0.9) 		492.9
(-1.6) 		557
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174826_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20681
Sequence Type Exemplar sequence
Representative Public ID CEK018E8R NCBI
Target Description CEK018E8R_rc /REP_DB=TREMBL Accession /GB=D32546 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001025939(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001025939 NCBI Caenorhabditis elegans CaDHerin family member (cdh-11) (cdh-11) mRNA, complete cds. 11/11 None
B0034.3a ENSEMBL cdna:known chromosome:CEL140:II:5945377:5956643:-1 gene:B0034.3 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174006 2 1 NM_001025939 174826_at (11), 187795_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5945383-5945785(-) 100.0 100.0
Public Domain and Genome References
Ensembl B0034.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK31387 Cadherin family protein 11, isoform a [Caenorhabditis elegans] ref|NP_001021110.1| CaDHerin family member (cdh-11) [Caenorhabditis elegans] gb|AAM00045.1| calsyntenin [Caenorhabditis elegans] 0.0
blast T29037 hypothetical protein B0034.3 - Caenorhabditis elegans 0.0
blast CAE59228 Hypothetical protein CBG02547 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002126 EMBL-EBI Cadherin 2.7E-10
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021110.1 1 849-871
B0034.3a 1 849-871
Sequence
Target Sequence 
>C. ELEGANS:174826_AT
gttatgatcatccttcaatattctcattttattcattttagtcacctccttcttcatcca
ttctcatcgatctcttcattttccaaaacttcctctctctctcaacattcatgactccct
ccctaactctgttttactgatattttgtacattttgagctgaaaaaatgttctcccaccc
tgttgattacatcacatatactgataatagtgaatactctccaagaaagaattcatttaa
aacataataattgataataactttattatatatttcttcaaaaaaagtaacaaaaattcc
cccaaaaattatcttcgtcttcatactgtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTATGATCATCCTTCAATATTCTC 535 447 16 Antisense
TTTATTCATTTTAGTCACCTCCTTC 342 675 43 Antisense
CTCTTCATTTTCCAAAACTTCCTCT 669 227 87 Antisense
CCTCCCTAACTCTGTTTTACTGATA 205 267 133 Antisense
GTTTTACTGATATTTTGTACATTTT 185 449 146 Antisense
AGCTGAAAAAATGTTCTCCCACCCT 633 71 172 Antisense
TCCCACCCTGTTGATTACATCACAT 656 597 188 Antisense
GTTGATTACATCACATATACTGATA 172 439 197 Antisense
GATAATAGTGAATACTCTCCAAGAA 399 421 218 Antisense
CCCCAAAAATTATCTTCGTCTTCAT 5 261 315 Antisense
AAATTATCTTCGTCTTCATACTGTC 139 117 321 Antisense
Sequence Source Affymetrix Proprietary Database