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[174821_at]

Description CEK003DYR_rc /REP_DB=TREMBL Accession /GB=D27744 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3d11 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 35      4grp_highest_8_8 > 36      4grp_high_8_8 > 0      6grp_highest_nonorm > 80      6grp_total > 26      4grp_total > 15      6grp_highest_sub > 02      6grp_high1_sub > 02      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 350.5
(3)
P 		106.6
(-3)
P 		168
(-1.5)
P 		291.9
(1.6)
P 		244
B 358.4
(3)
P 		128.2
(-3)
P 		297.1
(1.4)
P 		260.7
(0.5)
P 		230
C 289.3
(3)
P 		198.5
(-3)
P 		224.1
(-1.3)
P 		244.9
(0.1)
P 		91
avr 332.7
(3) 		144.4
(-3) 		229.7
(-0.3) 		265.8
(0.9) 		188

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 191
1 2 3 4 5 6 range
A 321.9
(2.5)
P 		337.3
(3)
P 		151.8
(-3)
P 		223.1
(-0.7)
P 		167.2
(-2.5)
P 		287.9
(1.4)
P 		186
B 295.9
(2.7)
P 		303.2
(3)
P 		191.2
(-1.9)
P 		206.7
(-1.2)
P 		164.8
(-3)
P 		177.8
(-2.4)
P 		138
C 253.6
(0.6)
P 		317.7
(2.8)
P 		322.7
(3)
P 		146.3
(-3)
P 		164.9
(-2.4)
P 		242.5
(0.3)
P 		176
avr 290.5
(1.9) 		319.4
(3) 		221.9
(-0.8) 		192
(-2) 		165.6
(-3) 		236.1
(-0.2) 		154
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 127.6
(3)
P 		23.1
(-3)
P 		43.9
(-1.8)
P 		42.7
(-1.9)
P 		105
B 114.3
(3)
P 		31.7
(-3)
P 		68.8
(-0.3)
P 		55.6
(-1.3)
P 		83
C 95.8
(3)
P 		57.1
(-1.3)
P 		78.1
(1.1)
P 		41.3
(-3)
P 		55
avr 112.6
(3) 		37.3
(-3) 		63.6
(-0.9) 		46.5
(-2.3) 		75

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 91
1 2 3 4 5 6 range
A 59.3
(-1.2)
P 		120
(3)
P 		33.1
(-3)
P 		56.6
(-1.4)
P 		50.5
(-1.8)
P 		70.1
(-0.4)
P 		87
B 103
(3)
P 		100.9
(2.8)
P 		46.4
(-3)
P 		54.8
(-2.1)
P 		67
(-0.8)
P 		66.3
(-0.9)
P 		57
C 94
(2.7)
P 		96.9
(3)
P 		82.1
(1.7)
P 		29.4
(-3)
P 		53.3
(-0.9)
P 		81.2
(1.6)
P 		68
avr 85.4
(0.9) 		105.9
(3) 		53.9
(-2.3) 		46.9
(-3) 		56.9
(-2) 		72.5
(-0.4) 		59
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174821_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22129
Sequence Type Exemplar sequence
Representative Public ID CEK003DYR NCBI
Target Description CEK003DYR_rc /REP_DB=TREMBL Accession /GB=D27744 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3d11 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
K07E3.1 ENSEMBL cdna:known chromosome:CEL140:X:8108333:8114686:1 gene:K07E3.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8114316-8114675(+) 100.0 100.0
Public Domain and Genome References
Ensembl K07E3.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC69098 Hypothetical protein K07E3.1 [Caenorhabditis elegans] ref|NP_509366.1| K07E3.1 [Caenorhabditis elegans] 0.0
blast CAE70352 Hypothetical protein CBG16903 [Caenorhabditis briggsae] 5.0E-53
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
K07E3.1 4 41-63,68-90,100-122,135-157
Sequence
Target Sequence 
>C. ELEGANS:174821_AT
ttcacccagtatttgtaccattgccgtgaattcacagtattacatggtcgtccccttttc
cacaaaatctctttcagactccctccaccctgatcccgttttaattgtttcttgctgatt
tccctttcaaccgatcttcgtttttttttcaatagggtatatttgaaatgtcggaatgtc
gattcagcagtaaatttgatatgacactctgacttttttaaatgtaaatctgattgttta
tcagaattcaaccgggcccactgattattcattaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCACCCAGTATTTGTACCATTGCC 389 685 14 Antisense
TGTACCATTGCCGTGAATTCACAGT 472 559 27 Antisense
TTCACAGTATTACATGGTCGTCCCC 619 685 44 Antisense
CCCTTTTCCACAAAATCTCTTTCAG 541 259 66 Antisense
CCACAAAATCTCTTTCAGACTCCCT 255 275 73 Antisense
GATCCCGTTTTAATTGTTTCTTGCT 190 417 105 Antisense
TAATTGTTTCTTGCTGATTTCCCTT 553 633 115 Antisense
AATGTCGGAATGTCGATTCAGCAGT 180 163 180 Antisense
GATATGACACTCTGACTTTTTTAAA 208 425 211 Antisense
GTTTATCAGAATTCAACCGGGCCCA 682 447 249 Antisense
CCGGGCCCACTGATTATTCATTAAT 308 265 265 Antisense
Sequence Source Affymetrix Proprietary Database