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[174820_s_at]

Description CEK088C4R_rc /REP_DB=TREMBL Accession /GB=D64766 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88c4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 59      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 84      6grp_total > 49      4grp_total > 39      6grp_highest_sub > Cu      6grp_cgc > 09      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 383
1 2 3 4 range
A 811.5
(3)
P 		467
(-3)
P 		519.7
(-2.1)
P 		498.3
(-2.5)
P 		345
B 784.5
(3)
P 		434.2
(-2.9)
P 		429
(-3)
P 		644
(0.6)
P 		356
C 784.6
(3)
P 		463.4
(-3)
P 		583.9
(-0.7)
P 		603.5
(-0.4)
P 		321
avr 793.5
(3) 		454.9
(-3) 		510.9
(-2) 		581.9
(-0.7) 		339

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 624
1 2 3 4 5 6 range
A 682
(1.1)
P 		431.4
(-1.6)
P 		296.3
(-3)
P 		398.2
(-1.9)
P 		728.5
(1.6)
P 		860.3
(3)
P 		564
B 693.1
(0.8)
P 		495.8
(-1.1)
P 		294.5
(-3)
P 		400.5
(-2)
P 		610.8
(0)
P 		918.2
(3)
P 		624
C 584.4
(2.4)
P 		528.3
(1)
P 		387.8
(-2.3)
P 		359.2
(-3)
P 		543.2
(1.4)
P 		611.4
(3)
P 		252
avr 653.2
(1.2) 		485.2
(-1) 		326.2
(-3) 		386
(-2.2) 		627.5
(0.8) 		796.6
(3) 		470
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 223
1 2 3 4 range
A 295.5
(3)
P 		101.4
(-2.2)
P 		135.9
(-1.3)
P 		72.9
(-3)
P 		223
B 250.2
(3)
P 		107.2
(-2.7)
P 		99.4
(-3)
P 		137.2
(-1.5)
P 		151
C 259.7
(3)
P 		133.2
(-1.8)
P 		203.5
(0.9)
P 		101.8
(-3)
P 		158
avr 268.5
(3) 		113.9
(-2.6) 		146.3
(-1.5) 		104
(-3) 		165

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 278
1 2 3 4 5 6 range
A 125.7
(-0.6)
P 		153.4
(0.4)
P 		64.5
(-3)
P 		101
(-1.6)
P 		219.8
(3)
P 		209.5
(2.6)
P 		155
B 241.2
(0.8)
P 		165
(-0.9)
P 		71.5
(-3)
P 		106.1
(-2.2)
P 		248.2
(0.9)
P 		342.4
(3)
P 		271
C 216.6
(3)
P 		161.2
(0.7)
P 		98.7
(-1.9)
P 		72.2
(-3)
P 		175.8
(1.3)
P 		204.7
(2.5)
P 		144
avr 194.5
(1) 		159.9
(-0.2) 		78.2
(-3) 		93.1
(-2.5) 		214.6
(1.7) 		252.2
(3) 		174
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174820_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20660
Sequence Type Exemplar sequence
Representative Public ID CEK088C4R NCBI
Target Description CEK088C4R_rc /REP_DB=TREMBL Accession /GB=D64766 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk88c4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_062685(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_062685 NCBI Caenorhabditis elegans Cell Division Cycle related family member (cdc-14) (cdc-14) mRNA, complete cds. 11/11 None
GENEFINDER00000029033 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:5589534:5593343:-1 9/11 None
C17G10.4c.1 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593395:-1 gene:C17G10.4 11/11 None
C17G10.4c.2 ENSEMBL cdna:known chromosome:CEL140:II:5589179:5593397:-1 gene:C17G10.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173945 5 1 NM_001026798 173747_at (11), 186610_s_at (10)
NM_062683 186608_s_at (11), 186698_s_at (11)
NM_062684 186610_s_at (10)
NM_062685 174820_s_at (11), 186698_s_at (11)
NM_170993 173747_at (11), 186610_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:5589948-5590285(-) 100.0 100.0
Public Domain and Genome References
Ensembl C17G10.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAT74544 CDC-14 phosphatase isoform C [Caenorhabditis elegans] gb|AAB93458.1| Cell division cycle related protein 14, isoform c [Caenorhabditis elegans] ref|NP_495086.1| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] gb|AAB94407.1| protein phosphatase CDC14 [Caenorhabditis elegans] pir||E88158 protein C17G10.4c [imported] - Caenorhabditis elegans 0.0
blast AAT74543 CDC-14 phosphatase isoform B [Caenorhabditis elegans] gb|AAB93459.1| Cell division cycle related protein 14, isoform b [Caenorhabditis elegans] ref|NP_495084.3| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] sp|P81299|CDC14_CAEEL Probable tyrosine-protein phosphatase cdc-14 (Cell division cycle-related protein 14) pir||T34097 probable protein-tyrosine-phosphatase (EC 3.1.3.48) CDC14 - Caenorhabditis elegans 0.0
blast AAT74542 CDC-14 phosphatase isoform A [Caenorhabditis elegans] gb|AAM54205.1| Cell division cycle related protein 14, isoform a [Caenorhabditis elegans] ref|NP_495085.2| Cell Division Cycle related family member (cdc-14) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 4.2E-15
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029033 1 762-784
Sequence
Target Sequence 
>C. ELEGANS:174820_S_AT
gtacaacgaacaagatagctgctcttgctctaaaaatcaaatctcgatattgtctactaa
aaccgtgctcttttttattacacattctgtatgcttttcttagtttgtcacgtgtgctca
tgttgctccttttacattttgctcttgttaattgtcgtactacattccat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTACAACGAACAAGATAGCTGCTCT 517 461 145 Antisense
GATAGCTGCTCTTGCTCTAAAAATC 680 423 158 Antisense
AAATCAAATCTCGATATTGTCTACT 479 117 178 Antisense
ATTGTCTACTAAAACCGTGCTCTTT 684 3 193 Antisense
AACCGTGCTCTTTTTTATTACACAT 153 145 205 Antisense
TACACATTCTGTATGCTTTTCTTAG 223 643 223 Antisense
GTATGCTTTTCTTAGTTTGTCACGT 617 455 233 Antisense
TTTGTCACGTGTGCTCATGTTGCTC 130 667 248 Antisense
GTTGCTCCTTTTACATTTTGCTCTT 39 441 266 Antisense
ACATTTTGCTCTTGTTAATTGTCGT 147 105 278 Antisense
TGTTAATTGTCGTACTACATTCCAT 206 561 290 Antisense
Sequence Source Affymetrix Proprietary Database