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[174817_at]

Description CEK098B7R_rc /REP_DB=TREMBL Accession /GB=D72382 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98b7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 30      6grp_high1_10_10 > 05      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 14      6grp_total > 05      4grp_total > 21      6grp_highest_sub > De      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6294
1 2 3 4 range
A 6501.4
(0.8)
P 		3814.1
(-1.8)
P 		2605.8
(-3)
P 		8753.3
(3)
P 		6148
B 6341
(0.5)
P 		3942.1
(-1.8)
P 		2660.6
(-3)
P 		8899.9
(3)
P 		6239
C 6854.6
(1.4)
P 		4303.5
(-1.7)
P 		3160.5
(-3)
P 		8255.3
(3)
P 		5095
avr 6565.7
(0.9) 		4019.9
(-1.8) 		2809
(-3) 		8636.2
(3) 		5827

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2999
1 2 3 4 5 6 range
A 4907.9
(3)
P 		4611.7
(1.9)
P 		3409.2
(-2.6)
P 		3817.7
(-1.1)
P 		3458.7
(-2.5)
P 		3315.3
(-3)
P 		1593
B 4781
(3)
P 		4529.5
(2.2)
P 		4531
(2.2)
P 		3775.2
(-0.4)
P 		3245.5
(-2.1)
P 		2982.1
(-3)
P 		1799
C 5692.7
(3)
P 		3895.1
(-0.6)
P 		4110.4
(-0.2)
P 		3283.3
(-1.8)
P 		4416.3
(0.4)
P 		2693.3
(-3)
P 		2999
avr 5127.2
(3) 		4345.4
(0.8) 		4016.9
(-0.1) 		3625.4
(-1.2) 		3706.8
(-1) 		2996.9
(-3) 		2130
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1751
1 2 3 4 range
A 2367.2
(3)
P 		827.9
(-2.5)
P 		681.2
(-3)
P 		1281.3
(-0.9)
P 		1686
B 2022.1
(3)
P 		973.6
(-1.5)
P 		616.5
(-3)
P 		1896.6
(2.5)
P 		1406
C 2269.1
(3)
P 		1237.3
(-2.3)
P 		1101.5
(-3)
P 		1392
(-1.5)
P 		1168
avr 2219.5
(3) 		1012.9
(-2.1) 		799.7
(-3) 		1523.3
(0.1) 		1420

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1450
1 2 3 4 5 6 range
A 904.7
(-1.9)
P 		1640.1
(3)
P 		742.4
(-3)
P 		968.2
(-1.5)
P 		1043.7
(-1)
P 		807.2
(-2.6)
P 		898
B 1663.5
(3)
P 		1507.7
(1.6)
P 		1100.3
(-2.1)
P 		999.9
(-3)
P 		1318.6
(-0.1)
P 		1112
(-2)
P 		664
C 2110
(3)
P 		1188.5
(-0.8)
P 		1046.2
(-1.4)
P 		660.3
(-3)
P 		1429
(0.2)
P 		901.6
(-2)
P 		1450
avr 1559.4
(3) 		1445.4
(2) 		963
(-2.2) 		876.1
(-3) 		1263.8
(0.4) 		940.3
(-2.4) 		683
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174817_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21183
Sequence Type Exemplar sequence
Representative Public ID CEK098B7R NCBI
Target Description CEK098B7R_rc /REP_DB=TREMBL Accession /GB=D72382 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk98b7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_065775(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_065775 NCBI Caenorhabditis elegans R02F2.1a (R02F2.1) mRNA, complete cds. 11/11 None
R02F2.1a.3 ENSEMBL cdna:known chromosome:CEL140:III:5501388:5506667:1 gene:R02F2.1 11/11 A 
R02F2.1a.1 ENSEMBL cdna:known chromosome:CEL140:III:5501817:5506667:1 gene:R02F2.1 11/11 A 
R02F2.1a.2 ENSEMBL cdna:known chromosome:CEL140:III:5501846:5506667:1 gene:R02F2.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175757 4 1 NM_065774 183661_at (11)
NM_065775 174817_at (11), 183661_at (11)
NM_181947 183661_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:5505963-5506330(+) 100.0 100.0
Public Domain and Genome References
Ensembl R02F2.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL06042 Hypothetical protein R02F2.1a [Caenorhabditis elegans] ref|NP_498176.1| R02F2.1a [Caenorhabditis elegans] 1.0E-152
blast AAL06043 Hypothetical protein R02F2.1b [Caenorhabditis elegans] ref|NP_498175.1| R02F2.1b [Caenorhabditis elegans] 1.0E-150
blast T16660 hypothetical protein R02F2.1 - Caenorhabditis elegans 1.0E-147
Protein Domains
Database ID Description E-Value
Pfam IPR006671 EMBL-EBI Cyclin, N-terminal domain 1.2E-10
Sequence
Target Sequence 
>C. ELEGANS:174817_AT
cactcttatcacagcggctggaccgcgacagatttattcccatctcccccatcccgtgat
taatcacttttcacacaaaaaatctatgctctcttctgtacaagaaggtagaacctgtcg
tctagccgttttttccatcaccccattcccccacacaccatctctctcatactaatacaa
attctatatatatattctgtcaaatttctttagtcaagactccgtctactctaatttttc
ccctttcctatcccccgctaattaccccttgcgaagctatttcatcaataccatcatgtt
cttgaaggaccccgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACTCTTATCACAGCGGCTGGACCG 449 195 26 Antisense
TCACAGCGGCTGGACCGCGACAGAT 134 629 34 Antisense
GCTGGACCGCGACAGATTTATTCCC 403 295 42 Antisense
CACAAAAAATCTATGCTCTCTTCTG 183 195 99 Antisense
AAAATCTATGCTCTCTTCTGTACAA 542 133 104 Antisense
ACCATCTCTCTCATACTAATACAAA 369 87 182 Antisense
TCTCTCTCATACTAATACAAATTCT 226 613 186 Antisense
TAGTCAAGACTCCGTCTACTCTAAT 103 653 236 Antisense
CAAGACTCCGTCTACTCTAATTTTT 158 185 240 Antisense
ATCAATACCATCATGTTCTTGAAGG 2 27 309 Antisense
CCATCATGTTCTTGAAGGACCCCGC 324 269 316 Antisense
Sequence Source Affymetrix Proprietary Database