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[174816_at]

Description CEK031D8R_rc /REP_DB=TREMBL Accession /GB=D33468 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 90      4grp_highest_8_8 > 13      4grp_high_8_8 > 31      6grp_highest_nonorm > 74      6grp_total > 0      4grp_total > 24      6grp_total_sub > Hat      6grp_cgc > 99      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 622
1 2 3 4 range
A 711.5
(-3)
P 		739.4
(-2.5)
P 		1055.3
(3)
P 		945.8
(1.1)
P 		344
B 706.6
(-3)
P 		706.1
(-3)
P 		814.7
(-1.6)
P 		1183.6
(3)
P 		478
C 561.8
(-3)
P 		922.9
(1.4)
P 		1049.3
(3)
P 		995.5
(2.3)
P 		488
avr 660
(-3) 		789.5
(-1) 		973.1
(1.9) 		1041.6
(3) 		382

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 658
1 2 3 4 5 6 range
A 597.2
(-1.7)
P 		698.4
(-0.7)
P 		530.4
(-2.4)
P 		475.9
(-3)
P 		1056.4
(3)
P 		628.9
(-1.4)
P 		581
B 686.5
(0.6)
P 		882.6
(3)
P 		398
(-3)
P 		475.3
(-2)
P 		884.3
(3)
P 		763.7
(1.5)
P 		486
C 545.4
(-2.6)
P 		1046.1
(3)
P 		512.4
(-3)
P 		571.4
(-2.3)
P 		746
(-0.4)
P 		708.9
(-0.8)
P 		534
avr 609.7
(-1.1) 		875.7
(2.7) 		480.3
(-3) 		507.5
(-2.6) 		895.6
(3) 		700.5
(0.2) 		415
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 227
1 2 3 4 range
A 259
(2.3)
P 		160.5
(-2)
P 		275.9
(3)
P 		138.4
(-3)
P 		138
B 225.3
(0.9)
P 		174.4
(-3)
P 		188.8
(-1.9)
P 		252.2
(3)
P 		78
C 186
(-2.5)
P 		265.3
(-0)
P 		365.7
(3)
P 		167.9
(-3)
P 		198
avr 223.4
(-0.5) 		200.1
(-2.1) 		276.8
(3) 		186.2
(-3) 		91

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 263
1 2 3 4 5 6 range
A 110.1
(-3)
P 		248.4
(1)
P 		115.5
(-2.8)
P 		120.7
(-2.7)
P 		318.8
(3)
P 		153.1
(-1.8)
P 		209
B 238.9
(0.2)
P 		293.8
(1.5)
P 		96.7
(-3)
P 		125.9
(-2.3)
P 		359.3
(3)
P 		284.8
(1.3)
P 		263
C 202.1
(-0.4)
P 		319.2
(3)
P 		130.4
(-2.5)
P 		114.9
(-3)
P 		241.4
(0.7)
P 		237.3
(0.6)
P 		204
avr 183.7
(-0.8) 		287.1
(2.4) 		114.2
(-3) 		120.5
(-2.8) 		306.5
(3) 		225.1
(0.5) 		192
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174816_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20354
Sequence Type Exemplar sequence
Representative Public ID CEK031D8R NCBI
Target Description CEK031D8R_rc /REP_DB=TREMBL Accession /GB=D33468 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061202(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061202 NCBI Caenorhabditis elegans PaTched Related family member (ptr-23) (ptr-23) mRNA, complete cds. 11/11 None
ZK270.1 ENSEMBL cdna:known chromosome:CEL140:I:14917358:14921241:1 gene:ZK270.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14920496-14921162(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol ptr-23
Ensembl ZK270.1
Entrez Gene 173362 Entrez gene
SwissProt O02246 EMBL-EBI
WormBase CE15305 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8158 hedgehog receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05002 Hypothetical protein ZK270.1 [Caenorhabditis elegans] emb|CAB04167.1| Hypothetical protein ZK270.1 [Caenorhabditis elegans] ref|NP_493603.1| PaTched Related family member (ptr-23) [Caenorhabditis elegans] 0.0
blast CAE72568 Hypothetical protein CBG19753 [Caenorhabditis briggsae] 0.0
blast CAE60539 Hypothetical protein CBG04166 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003392 EMBL-EBI Patched family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_493603.1 10 50-72,315-337,347-369,376-398,466-488,546-568,782-801,806-828,886-908,915-937
ZK270.1 10 50-72,315-337,347-369,376-398,466-488,546-568,782-801,806-828,886-908,915-937
Sequence
Target Sequence 
>C. ELEGANS:174816_AT
taacttctccacctattaatctcatgacacaaacctctgttccatttgagtttcccgttt
ccttccagttttctgaaaatattcgtccccaccaaaaagtccgggtttttatagtgttgc
ccaagttttcatttttcgtgttttttgtttttgtgtacattttgtgctttgctgatcata
cctattagaaattttcaaagtgaagaattgatttttttccggtgattttccgacatcttc
ttgagtttcattttgccaagctagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAACTTCTCCACCTATTAATCTCAT 213 639 270 Antisense
GTGTTGCCCAAGTTTTCATTTTTCG 342 485 383 Antisense
TGCCCAAGTTTTCATTTTTCGTGTT 213 585 387 Antisense
GTTTTTGTGTACATTTTGTGCTTTG 486 449 416 Antisense
TTGTGCTTTGCTGATCATACCTATT 590 707 431 Antisense
GCTTTGCTGATCATACCTATTAGAA 223 305 435 Antisense
GAAGAATTGATTTTTTTCCGGTGAT 144 337 471 Antisense
TTTCCGGTGATTTTCCGACATCTTC 508 669 485 Antisense
TTTTCCGACATCTTCTTGAGTTTCA 338 677 495 Antisense
GACATCTTCTTGAGTTTCATTTTGC 96 371 501 Antisense
TGAGTTTCATTTTGCCAAGCTAGAA 385 567 511 Antisense
Sequence Source Affymetrix Proprietary Database