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[174812_at]

Description CEK011A1R_rc /REP_DB=TREMBL Accession /GB=D32330 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk11a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 04      6grp_high1_10_10 > 21      4grp_highest_8_8 > 18      4grp_high_8_8 > 63      6grp_highest_nonorm > 06      6grp_total > 31      4grp_total > 56      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9247
1 2 3 4 range
A 9728.7
(-1.1)
P 		9138.9
(-1.5)
P 		16065.4
(3)
P 		6818.3
(-3)
P 		9247
B 9982.3
(-1.1)
P 		12529.1
(0.8)
P 		15377.7
(3)
P 		7548
(-3)
P 		7830
C 8245.2
(-2.1)
P 		11699.5
(0.9)
P 		14138
(3)
P 		7240.5
(-3)
P 		6898
avr 9318.7
(-1.4) 		11122.5
(-0.1) 		15193.7
(3) 		7202.3
(-3) 		7991

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10297
1 2 3 4 5 6 range
A 10357.9
(3)
P 		10160.9
(2.8)
P 		9795.2
(2.5)
P 		7753.2
(0.8)
P 		6601.8
(-0.2)
P 		3271.3
(-3)
P 		7087
B 11449.1
(1.7)
P 		11721.8
(1.9)
P 		13567.8
(3)
P 		10920.7
(1.4)
P 		5664.1
(-1.8)
P 		3718.2
(-3)
P 		9850
C 6882.2
(-0.3)
P 		11175.9
(3)
P 		10349.1
(2.4)
P 		8966.8
(1.3)
P 		5264.3
(-1.5)
P 		3378.5
(-3)
P 		7797
avr 9563.1
(1.7) 		11019.5
(2.8) 		11237.4
(3) 		9213.6
(1.4) 		5843.4
(-1.2) 		3456
(-3) 		7781
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3929
1 2 3 4 range
A 3542.2
(1.8)
P 		1983.8
(-1.2)
P 		4199.8
(3)
P 		998.1
(-3)
P 		3202
B 3183.3
(1.8)
P 		3094.4
(1.6)
P 		3563.4
(3)
P 		1608.5
(-3)
P 		1955
C 2729.4
(-0.6)
P 		3363.7
(0.5)
P 		4927.5
(3)
P 		1220.9
(-3)
P 		3707
avr 3151.6
(0.8) 		2814
(0.1) 		4230.2
(3) 		1275.8
(-3) 		2954

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3187
1 2 3 4 5 6 range
A 1909.4
(-0.6)
P 		3613.7
(3)
P 		2133.2
(-0.2)
P 		1966.4
(-0.5)
P 		1992.1
(-0.5)
P 		796.4
(-3)
P 		2817
B 3983.7
(3)
P 		3901.7
(2.8)
P 		3294.7
(1.4)
P 		2892.5
(0.5)
P 		2301.3
(-0.9)
P 		1386.5
(-3)
P 		2597
C 2550.9
(0.7)
P 		3410.1
(3)
P 		2634
(1)
P 		1803.2
(-1.2)
P 		1703.4
(-1.5)
P 		1131
(-3)
P 		2279
avr 2814.7
(1) 		3641.8
(3) 		2687.3
(0.7) 		2220.7
(-0.4) 		1998.9
(-0.9) 		1104.6
(-3) 		2537
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174812_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22118
Sequence Type Exemplar sequence
Representative Public ID CEK011A1R NCBI
Target Description CEK011A1R_rc /REP_DB=TREMBL Accession /GB=D32330 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk11a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
C49F5.1.1 ENSEMBL cdna:known chromosome:CEL140:X:11965883:11968237:1 gene:C49F5.1 11/11 A 
C49F5.1.3 ENSEMBL cdna:known chromosome:CEL140:X:11965902:11968030:1 gene:C49F5.1 10/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:11967449-11968009(+) 100.0 100.0
Public Domain and Genome References
Ensembl C49F5.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB03975 Hypothetical protein C49F5.1 [Caenorhabditis elegans] ref|NP_510002.1| C49F5.1 [Caenorhabditis elegans] sp|O17680|METM_CAEEL Probable S-adenosylmethionine synthetase C49F5.1 (Methionine adenosyltransferase) (AdoMet synthetase) 0.0
blast CAE69397 Hypothetical protein CBG15526 [Caenorhabditis briggsae] 0.0
blast AAA82279 Hypothetical protein C06E7.3a [Caenorhabditis elegans] ref|NP_500871.1| C06E7.3a [Caenorhabditis elegans] sp|P50306|METL_CAEEL Probable S-adenosylmethionine synthetase C06E7.3 (Methionine adenosyltransferase) (AdoMet synthetase) 1.0E-175
Protein Domains
Database ID Description E-Value
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 4.4E-64
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 4.7E-90
Pfam IPR002133 EMBL-EBI S-adenosylmethionine synthetase 2.4E-86
Sequence
Target Sequence 
>C. ELEGANS:174812_AT
ttcagctagatgaccaacacctcgccgtatttaaaaaaaaacgattaacgtattttgacc
ttttccctttcctcccccaccagcctcttactctgatgcgatcccccaattttctgtccc
ttcctgttcactgatgatgtgcactcttcagagcatttttcaacagtgccttctcttttt
taagtccccggtttccgctacccgctgagctgtcttgacttttagaatagcttcattttc
aaaaaattcatattaaaaaaaaacatcacaacgcaaaaaaatagttcttgacagtttcta
atgcccgaaacatattttctccaattacatagtattaaatatcctttctcataacttcct
cattgctcaatgtctcaactgccaccaactgagtggtatcgtacgatttttaagcaccat
caaatctttggttataattaatacatattttgttaaattgtaataatccttcggtggtag
ttcactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCAGCTAGATGACCAACACCTCGC 25 685 53 Antisense
TCCCTTCCTGTTCACTGATGATGTG 119 599 169 Antisense
GATGTGCACTCTTCAGAGCATTTTT 465 409 188 Antisense
TTCAACAGTGCCTTCTCTTTTTTAA 518 685 211 Antisense
CCCGCTGAGCTGTCTTGACTTTTAG 647 257 253 Antisense
GTTCTTGACAGTTTCTAATGCCCGA 380 443 336 Antisense
ATGCCCGAAACATATTTTCTCCAAT 443 39 353 Antisense
CTCATAACTTCCTCATTGCTCAATG 464 229 400 Antisense
GTCTCAACTGCCACCAACTGAGTGG 414 469 424 Antisense
GTATCGTACGATTTTTAAGCACCAT 343 455 448 Antisense
ATAATCCTTCGGTGGTAGTTCACTG 565 23 515 Antisense
Sequence Source Affymetrix Proprietary Database