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[174811_at] mannose-6-phosphate isomerase

Description CEK076D8R_rc /REP_DB=TREMBL Accession /GB=D64602 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76d8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_highest_8_8 > 09      4grp_high_8_8 > 54      6grp_highest_nonorm > 22      6grp_total > 23      4grp_total > 58      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2722
1 2 3 4 range
A 1059.7
(-1.2)
P 		2532.4
(2.4)
P 		2786.8
(3)
P 		345.4
(-3)
P 		2441
B 949.4
(-1.4)
P 		2431.4
(2)
P 		2866.4
(3)
P 		279.6
(-3)
P 		2587
C 1213.1
(-0.9)
P 		2585.5
(2.1)
P 		3000.9
(3)
P 		278.7
(-3)
P 		2722
avr 1074.1
(-1.2) 		2516.4
(2.1) 		2884.7
(3) 		301.2
(-3) 		2584

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1353
1 2 3 4 5 6 range
A 2157
(3)
P 		1643.7
(0.7)
P 		1884.2
(1.8)
P 		1373.1
(-0.5)
P 		1466.9
(-0.1)
P 		804
(-3)
P 		1353
B 2096.3
(3)
P 		1842.7
(1.7)
P 		1947.5
(2.2)
P 		1928.1
(2.1)
P 		1250.2
(-1.4)
P 		952.8
(-3)
P 		1144
C 1745.4
(2.6)
P 		1802
(3)
P 		1717
(2.3)
P 		1519.6
(0.8)
P 		1257.4
(-1.3)
P 		1046.3
(-3)
P 		756
avr 1999.6
(3) 		1762.8
(1.7) 		1849.6
(2.2) 		1606.9
(0.8) 		1324.8
(-0.8) 		934.4
(-3) 		1065
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 999
1 2 3 4 range
A 385.8
(-0)
P 		549.7
(1.4)
P 		728.5
(3)
P 		50.6
(-3)
P 		678
B 302.8
(-0.6)
P 		600.5
(2.4)
P 		664.2
(3)
P 		59.6
(-3)
P 		605
C 401.6
(-0.9)
P 		743.4
(1.2)
P 		1045.9
(3)
P 		47
(-3)
P 		999
avr 363.4
(-0.5) 		631.2
(1.6) 		812.9
(3) 		52.4
(-3) 		761

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 534
1 2 3 4 5 6 range
A 397.6
(0.1)
P 		584.6
(3)
P 		410.3
(0.3)
P 		348.2
(-0.6)
P 		442.6
(0.8)
P 		195.7
(-3)
P 		389
B 729.4
(3)
P 		613.4
(1.1)
P 		472.9
(-1.1)
P 		510.7
(-0.5)
P 		507.9
(-0.6)
P 		355.3
(-3)
P 		374
C 646.9
(3)
P 		549.8
(1.3)
P 		437
(-0.7)
P 		305.6
(-3)
P 		406.9
(-1.2)
P 		350.2
(-2.2)
P 		341
avr 591.3
(3) 		582.6
(2.8) 		440.1
(-0.1) 		388.2
(-1.2) 		452.5
(0.1) 		300.4
(-3) 		291
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174811_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21741
Sequence Type Exemplar sequence
Representative Public ID CEK076D8R NCBI
Target Description CEK076D8R_rc /REP_DB=TREMBL Accession /GB=D64602 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk76d8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072442(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_072442 NCBI Caenorhabditis elegans C05C8.7 (C05C8.7) mRNA, complete cds. 11/11 None
C05C8.7.2 ENSEMBL cdna:known chromosome:CEL140:V:7245500:7249643:-1 gene:C05C8.7 11/11 None
C05C8.7.1 ENSEMBL cdna:known chromosome:CEL140:V:7245500:7249880:-1 gene:C05C8.7 11/11 None
C05C8.7.3 ENSEMBL cdna:known chromosome:CEL140:V:7245501:7249890:-1 gene:C05C8.7 11/11 None
C05C8.7.4 ENSEMBL cdna:known chromosome:CEL140:V:7245538:7249750:-1 gene:C05C8.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:7245535-7245774(-) 100.0 100.0
Public Domain and Genome References
Gene Title mannose-6-phosphate isomerase
Ensembl C05C8.7
Entrez Gene 179120 Entrez gene
SwissProt O16315 EMBL-EBI
WormBase CE07925 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4476 mannose-6-phosphate isomerase activity inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAB65374 Hypothetical protein C05C8.7 [Caenorhabditis elegans] ref|NP_504843.1| C05C8.7 [Caenorhabditis elegans] 0.0
blast CAE72036 Hypothetical protein CBG19118 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001250 EMBL-EBI Mannose-6-phosphate isomerase, type I 1.9E-81
Sequence
Target Sequence 
>C. ELEGANS:174811_AT
caccaatcgctccgatctacaatgccatgagagttcgtggctgccgctttttgcgcctcg
atctacccgaatcttctagttttcgacacttttaccttaccttttttccccaattttccc
attcgtttcaccccagtctctctttctctttatgattttttttgcaattattttcttcat
gctatcagttg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CACCAATCGCTCCGATCTACAATGC 118 203 31 Antisense
TCGCTCCGATCTACAATGCCATGAG 110 601 37 Antisense
GATCTACAATGCCATGAGAGTTCGT 659 419 44 Antisense
GCCATGAGAGTTCGTGGCTGCCGCT 477 281 54 Antisense
TCGATCTACCCGAATCTTCTAGTTT 226 603 88 Antisense
GATCTACCCGAATCTTCTAGTTTTC 330 419 90 Antisense
GAATCTTCTAGTTTTCGACACTTTT 252 327 99 Antisense
TCTCTTTCTCTTTATGATTTTTTTT 338 613 169 Antisense
CTTTCTCTTTATGATTTTTTTTGCA 203 223 172 Antisense
CAATTATTTTCTTCATGCTATCAGT 66 181 195 Antisense
ATTATTTTCTTCATGCTATCAGTTG 58 15 197 Antisense
Sequence Source Affymetrix Proprietary Database