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[174810_at]

Description CEK034H6R_rc /REP_DB=TREMBL Accession /GB=D33708 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34h6 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 91      6grp_high1_10_10 > 09      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 90      6grp_total > 19      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 145.8
(-3)
P 		153.5
(-1.7)
P 		182.5
(3)
P 		147.1
(-2.8)
P 		37
B 128.5
(-1.3)
P 		117.7
(-3)
P 		155.8
(3)
P 		146.9
(1.6)
P 		38
C 105.1
(3)
P 		85.9
(-3)
P 		99.5
(1.3)
P 		95.8
(0.1)
P 		19
avr 126.5
(-1.3) 		119
(-3) 		145.9
(3) 		129.9
(-0.6) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 132
1 2 3 4 5 6 range
A 128.4
(-0.4)
P 		83.8
(-3)
P 		102.9
(-1.9)
P 		127.4
(-0.5)
P 		186.4
(3)
P 		103.4
(-1.9)
P 		103
B 133.6
(2.7)
P 		136.2
(3)
P 		121
(1.3)
P 		81.5
(-3)
P 		110.3
(0.2)
P 		128
(2.1)
P 		55
C 175.1
(3)
P 		54.7
(-3)
P 		114.6
(-0)
P 		142.1
(1.4)
P 		160.5
(2.3)
P 		102.3
(-0.6)
P 		120
avr 145.7
(2.3) 		91.6
(-3) 		112.8
(-0.9) 		117
(-0.5) 		152.4
(3) 		111.2
(-1.1) 		61
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 53.1
(3)
P 		33.3
(-0.8)
P 		47.7
(2)
P 		21.5
(-3)
P 		32
B 41
(3)
P 		29.1
(-3)
P 		36.1
(0.5)
P 		31.3
(-1.9)
P 		12
C 34.8
(3)
P 		24.7
(-0.3)
P 		34.7
(3)
P 		16.2
(-3)
P 		19
avr 43
(3) 		29
(-1.2) 		39.5
(2) 		23
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 48
1 2 3 4 5 6 range
A 23.7
(-2.8)
P 		29.8
(-1.7)
P 		22.4
(-3)
P 		32.3
(-1.2)
P 		56.2
(3)
P 		25.2
(-2.5)
P 		34
B 46.5
(2.7)
P 		45.3
(2.4)
P 		29.4
(-1.2)
P 		21.6
(-3)
P 		44.8
(2.3)
P 		47.7
(3)
P 		26
C 64.9
(3)
P 		16.7
(-3)
P 		29.2
(-1.4)
P 		28.6
(-1.5)
P 		51.9
(1.4)
P 		34.3
(-0.8)
P 		48
avr 45
(1.5) 		30.6
(-2.1) 		27
(-3) 		27.5
(-2.9) 		51
(3) 		35.7
(-0.8) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174810_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20768
Sequence Type Exemplar sequence
Representative Public ID CEK034H6R NCBI
Target Description CEK034H6R_rc /REP_DB=TREMBL Accession /GB=D33708 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34h6 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061284 NCBI Caenorhabditis elegans Y43H11AL.1 (Y43H11AL.1) mRNA, complete cds. 11/11 None
Y43H11AL.1.1 ENSEMBL cdna:known chromosome:CEL140:II:222705:232738:-1 gene:Y43H11AL.1 11/11 None
Y43H11AL.1.3 ENSEMBL cdna:known chromosome:CEL140:II:222705:232740:-1 gene:Y43H11AL.1 11/11 None
Y43H11AL.1.2 ENSEMBL cdna:known chromosome:CEL140:II:222705:232719:-1 gene:Y43H11AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:222720-223056(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43H11AL.1
Entrez Gene 173408 Entrez gene
SwissProt Q8IAA7 EMBL-EBI
WormBase CE32968 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAN39662 Hypothetical protein Y43H11AL.1 [Caenorhabditis elegans] ref|NP_493685.2| Y43H11AL.1 [Caenorhabditis elegans] 0.0
blast CAE62850 Hypothetical protein CBG07029 [Caenorhabditis briggsae] 9.0E-70
Sequence
Target Sequence 
>C. ELEGANS:174810_AT
ttatttgttcggtttattaattgattacccttttttccttttttttcaatgtttaaattc
aacaaaaaccacgcgctgctatcaaattctgtagtttgtagtcaatagcagcgtgtcatc
aaaatagtatcattttcttataacatttcattttctccccccgtttaatttcactttcta
tcatttttttttggtccttcgatttttctggtttttatcgaaaattctgaaattattttt
ttcgctga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTATTTGTTCGGTTTATTAATTGAT 294 677 40 Antisense
TCAACAAAAACCACGCGCTGCTATC 272 629 98 Antisense
ACCACGCGCTGCTATCAAATTCTGT 573 85 107 Antisense
GCGCTGCTATCAAATTCTGTAGTTT 22 289 112 Antisense
GTTTGTAGTCAATAGCAGCGTGTCA 118 453 133 Antisense
GCAGCGTGTCATCAAAATAGTATCA 250 315 147 Antisense
AATAGTATCATTTTCTTATAACATT 248 171 162 Antisense
TTTCTTATAACATTTCATTTTCTCC 31 673 173 Antisense
CCCGTTTAATTTCACTTTCTATCAT 165 259 199 Antisense
GTTTAATTTCACTTTCTATCATTTT 53 451 202 Antisense
ATTCTGAAATTATTTTTTTCGCTGA 205 9 263 Antisense
Sequence Source Affymetrix Proprietary Database