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[174809_at]

Description CEC4001_rc /REP_DB=TREMBL Accession /GB=C08400 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk188a10 : 3prime end, single read.
Cluster 6grp_total > 28      4grp_total > 34      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 82.7
(-3)
A 		136.4
(3)
P 		90.5
(-2.1)
A 		123.1
(1.5)
A 		54
B 78.2
(-3)
M 		95.6
(-0.2)
A 		101.2
(0.7)
A 		115.4
(3)
P 		37
C 79.4
(-0.6)
A 		91.5
(3)
A 		71.3
(-3)
A 		72.9
(-2.5)
A 		20
avr 80.1
(-3) 		107.8
(3) 		87.7
(-1.4) 		103.8
(2.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 77.4
(2.4)
A 		44.1
(-0.7)
A 		68.7
(1.6)
A 		19
(-3)
A 		60.2
(0.8)
A 		83.4
(3)
A 		64
B 84.8
(1.5)
P 		12.9
(-3)
A 		49.5
(-0.7)
A 		33.6
(-1.7)
A 		107.8
(3)
A 		52
(-0.5)
A 		95
C 105.9
(3)
P 		45.7
(-2.4)
A 		40.5
(-2.8)
A 		38.7
(-3)
A 		38.5
(-3)
A 		68.1
(-0.4)
A 		67
avr 89.4
(3) 		34.2
(-2.6) 		52.9
(-0.7) 		30.4
(-3) 		68.8
(0.9) 		67.8
(0.8) 		59
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 30.1
(3)
A 		29.6
(2.8)
P 		23.6
(-0.2)
A 		18
(-3)
A 		12
B 24.9
(3)
M 		23.6
(-2.2)
A 		23.4
(-3)
A 		24.6
(1.8)
P 		2
C 26.3
(3)
A 		26.3
(3)
A 		24.8
(2.4)
A 		12.3
(-3)
A 		14
avr 27.1
(3) 		26.5
(2.6) 		23.9
(0.8) 		18.3
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 40
1 2 3 4 5 6 range
A 14.3
(0.7)
A 		15.7
(1.2)
A 		15
(0.9)
A 		4.8
(-3)
A 		18.2
(2.2)
A 		20.3
(3)
A 		16
B 29.5
(0.8)
P 		4.3
(-3)
A 		12
(-1.8)
A 		8.9
(-2.3)
A 		43.8
(3)
A 		19.4
(-0.7)
A 		40
C 39.3
(3)
P 		14
(-1.8)
A 		10.3
(-2.5)
A 		7.8
(-3)
A 		12.5
(-2.1)
A 		22.8
(-0.1)
A 		32
avr 27.7
(3) 		11.3
(-1.8) 		12.4
(-1.5) 		7.2
(-3) 		24.8
(2.2) 		20.8
(1) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174809_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22427
Sequence Type Exemplar sequence
Representative Public ID CEC4001 NCBI
Target Description CEC4001_rc /REP_DB=TREMBL Accession /GB=C08400 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk188a10 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000006105 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:1294888:1309365:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1309139-1309436(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508238 C52B11.3 [Caenorhabditis elegans] sp|Q18775|YYI3_CAEEL Probable G-protein coupled receptor C52B11.3 0.0
blast AAA82470 Hypothetical protein C52B11.3 [Caenorhabditis elegans] 0.0
blast CAE63568 Hypothetical protein CBG08056 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003131 EMBL-EBI K+ channel tetramerisation 1.4E-35
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 2.0E-96
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000006105 6 115-137,150-172,187-209,230-252,280-302,476-498
Sequence
Target Sequence 
>C. ELEGANS:174809_AT
tctccccttccgaacgtgattaaatctccagtttagacatgtatactttttttttcttct
gatttcttataatttataagtatgtcttttttggacagttgaattgaagaattgccacca
gtggagttgtggctataaattatattttttaagaaaccttcaagtaactagtattattac
actttctccaaaccactcttgcggatctgtcatttctttctaaggaaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCCCTTCCGAACGTGATTAAAT 28 611 16 Antisense
TCCGAACGTGATTAAATCTCCAGTT 63 595 24 Antisense
ATCTCCAGTTTAGACATGTATACTT 651 31 39 Antisense
ATGTATACTTTTTTTTTCTTCTGAT 690 47 54 Antisense
TTCTTCTGATTTCTTATAATTTATA 67 691 69 Antisense
TAAGTATGTCTTTTTTGGACAGTTG 371 635 92 Antisense
GAATTGAAGAATTGCCACCAGTGGA 36 325 116 Antisense
AGTGGAGTTGTGGCTATAAATTATA 444 57 135 Antisense
GAAACCTTCAAGTAACTAGTATTAT 454 351 168 Antisense
ATTATTACACTTTCTCCAAACCACT 230 13 188 Antisense
ATCTGTCATTTCTTTCTAAGGAACA 553 33 220 Antisense
Sequence Source Affymetrix Proprietary Database