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[174808_at]

Description CEK096D7R_rc /REP_DB=TREMBL Accession /GB=D72270 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk96d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 93      6grp_high1_10_10 > 48      4grp_highest_8_8 > 39      4grp_high_8_8 > 20      6grp_highest_nonorm > 85      6grp_total > 38      4grp_total > 20      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 664
1 2 3 4 range
A 686.4
(-1.1)
P 		685.3
(-1.1)
P 		581.5
(-3)
P 		906.8
(3)
P 		325
B 663.7
(-0.8)
P 		601.8
(-1.4)
P 		421.4
(-3)
P 		1085.1
(3)
P 		664
C 770.5
(1.5)
P 		744.6
(0.3)
P 		674.5
(-3)
P 		802.1
(3)
P 		128
avr 706.9
(-0.6) 		677.2
(-1.1) 		559.1
(-3) 		931.3
(3) 		372

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 749
1 2 3 4 5 6 range
A 1069.5
(3)
P 		794.7
(0.8)
P 		487.8
(-1.7)
P 		320.3
(-3)
P 		769.6
(0.6)
P 		962.2
(2.1)
P 		749
B 884.1
(1.3)
P 		808.7
(0.4)
P 		488.2
(-3)
P 		522.7
(-2.6)
P 		602.2
(-1.8)
P 		1046.9
(3)
P 		559
C 1025.7
(3)
P 		694.9
(0)
P 		417.2
(-2.5)
P 		359.1
(-3)
P 		743.8
(0.5)
P 		833.5
(1.3)
P 		667
avr 993.1
(3) 		766.1
(0.7) 		464.4
(-2.4) 		400.7
(-3) 		705.2
(0.1) 		947.5
(2.5) 		592
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 157
1 2 3 4 range
A 249.9
(3)
P 		148.8
(-2.2)
P 		152
(-2)
P 		132.7
(-3)
P 		117
B 211.6
(2.1)
P 		148.6
(-0.7)
P 		97.7
(-3)
P 		231.2
(3)
P 		134
C 255.1
(3)
P 		214.1
(0.9)
P 		235.1
(2)
P 		135.2
(-3)
P 		120
avr 238.9
(3) 		170.5
(-2.3) 		161.6
(-3) 		166.4
(-2.6) 		77

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 197.2
(0.5)
P 		282.6
(3)
P 		106.2
(-2.3)
P 		81.2
(-3)
P 		232.2
(1.5)
P 		234.3
(1.6)
P 		201
B 307.6
(1.2)
P 		269.2
(0.3)
P 		118.5
(-3)
P 		138.4
(-2.6)
P 		244.7
(-0.2)
P 		390.4
(3)
P 		272
C 380.2
(3)
P 		212
(-0.3)
P 		106.2
(-2.3)
P 		72.2
(-3)
P 		240.7
(0.3)
P 		279
(1)
P 		308
avr 295
(2.8) 		254.6
(1.6) 		110.3
(-2.6) 		97.3
(-3) 		239.2
(1.2) 		301.2
(3) 		204
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174808_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20581
Sequence Type Exemplar sequence
Representative Public ID CEK096D7R NCBI
Target Description CEK096D7R_rc /REP_DB=TREMBL Accession /GB=D72270 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk96d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T24B8.4 ENSEMBL cdna:known chromosome:CEL140:II:9063597:9071489:-1 gene:T24B8.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9063603-9063914(-) 88.42 100.0
Public Domain and Genome References
Ensembl T24B8.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92756 Hypothetical protein T24B8.4 [Caenorhabditis elegans] ref|NP_495936.1| T24B8.4 [Caenorhabditis elegans] 0.0
blast CAE59796 Hypothetical protein CBG03256 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR003124 EMBL-EBI Actin-binding WH2 1.0E-5
Sequence
Target Sequence 
>C. ELEGANS:174808_AT
cccatctttcggtgcaggaccaccgaaattcgcccaccacttcgtgatttgctttcggtg
ctttatcaatttctttctcgtgccttcttcctttttatgtattttccgatattttcagtc
gaatgctttcattacatcatttctcagaaatcccctcttctctctcccacaaacccttac
ctagtcgcatcgtttcatgtttaaaatttatatattttttatgtattttttttttctgaa
aaactaaaccatactatttagttcttattcgtcttcttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCCATCTTTCGGTGCAGGACCACCG 462 257 14 Antisense
GGTGCAGGACCACCGAAATTCGCCC 357 501 24 Antisense
ACCACTTCGTGATTTGCTTTCGGTG 603 83 49 Antisense
GCTTTCGGTGCTTTATCAATTTCTT 184 305 64 Antisense
TGCCTTCTTCCTTTTTATGTATTTT 251 585 94 Antisense
TATGTATTTTCCGATATTTTCAGTC 190 657 109 Antisense
GATATTTTCAGTCGAATGCTTTCAT 381 427 121 Antisense
TGCTTTCATTACATCATTTCTCAGA 38 581 137 Antisense
ATCATTTCTCAGAAATCCCCTCTTC 279 31 149 Antisense
TTACCTAGTCGCATCGTTTCATGTT 296 681 190 Antisense
TATTTAGTTCTTATTCGTCTTCTTT 633 661 268 Antisense
Sequence Source Affymetrix Proprietary Database