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[174807_s_at]

Description CEK031B1R_rc /REP_DB=TREMBL Accession /GB=D33444 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 72      6grp_high1_10_10 > 29      4grp_highest_8_8 > 38      4grp_high_8_8 > 03      6grp_highest_nonorm > 0      6grp_total > 38      4grp_total > 13      6grp_highest_sub > Cu      6grp_cgc > 05      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2343
1 2 3 4 range
A 1910.3
(3)
P 		1153.5
(-2.4)
P 		1068.9
(-3)
P 		1546.6
(0.4)
P 		841
B 1846.4
(-0.8)
P 		1123.3
(-2.6)
P 		973.9
(-3)
P 		3317
(3)
P 		2343
C 1861.4
(-0.1)
P 		1024
(-3)
P 		1070
(-2.8)
P 		2780
(3)
P 		1756
avr 1872.7
(0.3) 		1100.3
(-2.8) 		1037.6
(-3) 		2547.9
(3) 		1510

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1260
1 2 3 4 5 6 range
A 2195
(3)
P 		1887.3
(1.5)
P 		1191.7
(-1.9)
P 		970
(-3)
P 		1716.6
(0.7)
P 		1841.4
(1.3)
P 		1225
B 1856.6
(3)
P 		1792.9
(2.4)
P 		1598
(0.7)
P 		1183.5
(-2.9)
P 		1175.6
(-3)
P 		1596.3
(0.7)
P 		681
C 2089.2
(3)
P 		1683.3
(0.9)
P 		935
(-3)
P 		994.7
(-2.7)
P 		1408
(-0.5)
P 		1755.1
(1.3)
P 		1154
avr 2046.9
(3) 		1787.8
(1.4) 		1241.6
(-1.8) 		1049.4
(-3) 		1433.4
(-0.7) 		1730.9
(1.1) 		998
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 481
1 2 3 4 range
A 695.5
(3)
P 		250.4
(-2.7)
P 		279.4
(-2.3)
P 		226.4
(-3)
P 		469
B 588.8
(1.5)
P 		277.4
(-2.4)
P 		225.7
(-3)
P 		706.8
(3)
P 		481
C 616.2
(3)
P 		294.4
(-3)
P 		372.9
(-1.5)
P 		468.8
(0.3)
P 		322
avr 633.5
(3) 		274.1
(-3) 		292.7
(-2.7) 		467.3
(0.2) 		359

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 574
1 2 3 4 5 6 range
A 404.6
(-0.8)
P 		671.2
(3)
P 		259.5
(-2.8)
P 		246
(-3)
P 		518
(0.8)
P 		448.3
(-0.1)
P 		425
B 646
(3)
P 		596.8
(2.1)
P 		388
(-1.7)
P 		313.5
(-3)
P 		477.6
(-0)
P 		595.2
(2.1)
P 		333
C 774.4
(3)
P 		513.6
(0.3)
P 		238
(-2.6)
P 		200
(-3)
P 		455.6
(-0.3)
P 		587.5
(1)
P 		574
avr 608.3
(3) 		593.9
(2.8) 		295.2
(-2.3) 		253.2
(-3) 		483.7
(0.9) 		543.7
(1.9) 		355
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174807_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22132
Sequence Type Exemplar sequence
Representative Public ID CEK031B1R NCBI
Target Description CEK031B1R_rc /REP_DB=TREMBL Accession /GB=D33444 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171974 NCBI Caenorhabditis elegans Suppressor of Constitutive Dauer formation family member (scd-1) (scd-1) mRNA, complete cds. 11/11 None
H20J18.1a ENSEMBL cdna:known chromosome:CEL140:X:12503807:12513968:-1 gene:H20J18.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181408 2 1 NM_171974 173818_at (11), 174806_at (11), 174807_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12503848-12504203(-) 93.8 100.0
Public Domain and Genome References
Ensembl H20J18.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18898 Hypothetical protein H20J18.1a [Caenorhabditis elegans] ref|NP_741912.1| Suppressor of Constitutive Dauer formation family member (scd-1) [Caenorhabditis elegans] 0.0
blast CAD44137 Hypothetical protein H20J18.1b [Caenorhabditis elegans] ref|NP_741911.1| Suppressor of Constitutive Dauer formation family member (scd-1) [Caenorhabditis elegans] 0.0
blast CAE57237 Hypothetical protein CBG00115 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:174807_S_AT
aatagtcagttttttcttgatcccaaatgctccccttcttccaaaacttttcactttcca
cgttgctttctttcttgatgtattttgcaatcgtatcttgcccctcaatcgaatcacata
tgttatgttccctacttgaaatttggctagttcaaattggtggaactgttctgtacctct
gt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATAGTCAGTTTTTTCTTGATCCCA 381 173 40 Antisense
AGTCAGTTTTTTCTTGATCCCAAAT 200 61 43 Antisense
TTTTTTCTTGATCCCAAATGCTCCC 469 675 49 Antisense
CACGTTGCTTTCTTTCTTGATGTAT 620 199 98 Antisense
GCTTTCTTTCTTGATGTATTTTGCA 692 303 104 Antisense
TATTTTGCAATCGTATCTTGCCCCT 611 661 120 Antisense
TGCCCCTCAATCGAATCACATATGT 489 585 138 Antisense
ACATATGTTATGTTCCCTACTTGAA 390 105 155 Antisense
GTTCCCTACTTGAAATTTGGCTAGT 528 439 166 Antisense
TTTGGCTAGTTCAAATTGGTGGAAC 204 667 181 Antisense
TGGTGGAACTGTTCTGTACCTCTGT 384 549 197 Antisense
Sequence Source Affymetrix Proprietary Database