[Home] | [Total List]

[174806_at]

Description CEK031B1R_rc /REP_DB=TREMBL Accession /GB=D33444 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31b1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 28      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 20      6grp_total > 28      4grp_total > 14      6grp_highest_sub > De      6grp_cgc > 05      6grp_high1_sub > De      6grp_cgc_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1335
1 2 3 4 range
A 1360.1
(1.1)
P 		539.7
(-3)
P 		710.4
(-2.1)
P 		1733.3
(3)
P 		1194
B 1482.1
(1.2)
P 		728.4
(-2.2)
P 		553
(-3)
P 		1875.1
(3)
P 		1322
C 1239.5
(0.2)
P 		724
(-2.4)
P 		606.5
(-3)
P 		1779.2
(3)
P 		1173
avr 1360.6
(0.8) 		664
(-2.8) 		623.3
(-3) 		1795.9
(3) 		1173

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1270
1 2 3 4 5 6 range
A 1617.4
(3)
P 		1007.5
(-0.5)
P 		602.1
(-2.8)
P 		559.4
(-3)
P 		982.7
(-0.6)
P 		917.8
(-1)
P 		1058
B 1738.1
(3)
P 		1147.6
(0.2)
P 		468.5
(-3)
P 		767.3
(-1.6)
P 		714.8
(-1.8)
P 		980.8
(-0.6)
P 		1270
C 1459.9
(3)
P 		988.7
(0)
P 		696.2
(-1.8)
P 		509.4
(-3)
P 		726.2
(-1.6)
P 		894.6
(-0.6)
P 		951
avr 1605.1
(3) 		1047.9
(-0.3) 		588.9
(-3) 		612
(-2.9) 		807.9
(-1.7) 		931.1
(-1) 		1016
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 378
1 2 3 4 range
A 495.2
(3)
P 		117.2
(-3)
P 		185.7
(-1.9)
P 		253.7
(-0.8)
P 		378
B 472.6
(3)
P 		179.9
(-2.1)
P 		128.1
(-3)
P 		399.6
(1.7)
P 		345
C 410.3
(3)
P 		208.2
(-3)
P 		211.4
(-2.9)
P 		300
(-0.3)
P 		202
avr 459.4
(3) 		168.4
(-3) 		175.1
(-2.9) 		317.8
(0.1) 		291

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 502
1 2 3 4 5 6 range
A 298.1
(1.4)
P 		358.3
(3)
P 		131.1
(-3)
P 		141.9
(-2.7)
P 		296.5
(1.4)
P 		223.5
(-0.6)
P 		227
B 604.8
(3)
P 		382
(0.3)
P 		113.8
(-3)
P 		203.2
(-1.9)
P 		290.4
(-0.8)
P 		365.7
(0.1)
P 		491
C 541.1
(3)
P 		301.7
(-0.3)
P 		177.2
(-2)
P 		102.4
(-3)
P 		235
(-1.2)
P 		299.5
(-0.3)
P 		439
avr 481.3
(3) 		347.3
(0.6) 		140.7
(-3) 		149.2
(-2.9) 		274
(-0.7) 		296.2
(-0.3) 		341
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174806_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22132
Sequence Type Exemplar sequence
Representative Public ID CEK031B1R NCBI
Target Description CEK031B1R_rc /REP_DB=TREMBL Accession /GB=D33444 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk31b1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171974(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171974 NCBI Caenorhabditis elegans Suppressor of Constitutive Dauer formation family member (scd-1) (scd-1) mRNA, complete cds. 11/11 None
H20J18.1a ENSEMBL cdna:known chromosome:CEL140:X:12503807:12513968:-1 gene:H20J18.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181408 2 1 NM_171974 173818_at (11), 174806_at (11), 174807_s_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:12503848-12504203(-) 93.8 100.0
Public Domain and Genome References
Ensembl H20J18.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA18898 Hypothetical protein H20J18.1a [Caenorhabditis elegans] ref|NP_741912.1| Suppressor of Constitutive Dauer formation family member (scd-1) [Caenorhabditis elegans] 0.0
blast CAD44137 Hypothetical protein H20J18.1b [Caenorhabditis elegans] ref|NP_741911.1| Suppressor of Constitutive Dauer formation family member (scd-1) [Caenorhabditis elegans] 0.0
blast CAE57237 Hypothetical protein CBG00115 [Caenorhabditis briggsae] 1.0E-114
Sequence
Target Sequence 
>C. ELEGANS:174806_AT
tgtttgtttttctaccttccaatagtcagttttttcttgatcccaaatgctccccttctt
ccaaaacttttcactttccacgttgctttctttcttgatgtattttgcaatcgtatcttg
cccctcaatcgaatcacatatgttatgttccctacttgaaatttggctagttcaaattgg
tggaactgttctgtacctctgtccccatacatccttccataacacttgcgatcctttcaa
aaatttgtcccttctatctcatgtggctcttctttcctgaacagtgctttttaatcgtct
tggtttctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTTGTTTTTCTACCTTCCAATAG 393 561 20 Antisense
TTGTTTTTCTACCTTCCAATAGTCA 400 705 23 Antisense
TTTTTCTACCTTCCAATAGTCAGTT 310 673 26 Antisense
TAACACTTGCGATCCTTTCAAAAAT 307 639 239 Antisense
GCGATCCTTTCAAAAATTTGTCCCT 313 287 247 Antisense
TTCAAAAATTTGTCCCTTCTATCTC 610 685 255 Antisense
AAAAATTTGTCCCTTCTATCTCATG 290 129 258 Antisense
GCTCTTCTTTCCTGAACAGTGCTTT 34 301 285 Antisense
TTTCCTGAACAGTGCTTTTTAATCG 701 669 292 Antisense
AACAGTGCTTTTTAATCGTCTTGGT 498 137 299 Antisense
TGCTTTTTAATCGTCTTGGTTTCTT 36 579 304 Antisense
Sequence Source Affymetrix Proprietary Database