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[174805_at]

Description CEK024B2R_rc /REP_DB=TREMBL Accession /GB=D32960 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk24b2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 30      6grp_total > 06      4grp_total > 29      6grp_highest_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 646
1 2 3 4 range
A 1260.5
(3)
P 		992.7
(0.3)
P 		662.5
(-3)
P 		836.3
(-1.3)
P 		598
B 993.6
(3)
P 		715.5
(-1.4)
P 		614.5
(-3)
P 		973.6
(2.7)
P 		379
C 980.1
(1.5)
P 		799.1
(-0.8)
P 		617.6
(-3)
P 		1103.6
(3)
P 		486
avr 1078.1
(3) 		835.8
(-0.3) 		631.5
(-3) 		971.2
(1.6) 		447

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 760
1 2 3 4 5 6 range
A 1383.3
(3)
P 		837.3
(-1.8)
P 		705.3
(-3)
P 		702.9
(-3)
P 		722.4
(-2.8)
P 		739.1
(-2.7)
P 		680
B 1021.5
(2.9)
P 		1026.8
(3)
P 		820.1
(-0.1)
P 		623.5
(-3)
P 		686.9
(-2.1)
P 		678.3
(-2.2)
P 		403
C 1189.2
(3)
P 		909.2
(-0.1)
P 		648.1
(-3)
P 		805.2
(-1.3)
P 		1019.1
(1.1)
P 		676.7
(-2.7)
P 		541
avr 1198
(3) 		924.4
(-0.3) 		724.5
(-2.7) 		710.5
(-2.9) 		809.5
(-1.7) 		698
(-3) 		500
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 337
1 2 3 4 range
A 459
(3)
P 		215.5
(-1.3)
P 		173.2
(-2.1)
P 		122.4
(-3)
P 		337
B 316.9
(3)
P 		176.7
(-1.8)
P 		142.4
(-3)
P 		207.5
(-0.8)
P 		175
C 324.4
(3)
P 		229.8
(-1.1)
P 		215.2
(-1.7)
P 		186.1
(-3)
P 		138
avr 366.8
(3) 		207.3
(-1.9) 		176.9
(-2.8) 		172
(-3) 		195

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 287
1 2 3 4 5 6 range
A 255
(1.2)
P 		297.8
(3)
P 		153.6
(-3)
P 		178.3
(-2)
P 		218
(-0.3)
P 		180
(-1.9)
P 		144
B 355.4
(3)
P 		341.8
(2.6)
P 		199.1
(-1.9)
P 		165.2
(-3)
P 		279.1
(0.6)
P 		252.9
(-0.2)
P 		190
C 440.8
(3)
P 		277.4
(-0.5)
P 		164.9
(-2.9)
P 		161.9
(-3)
P 		329.8
(0.6)
P 		226.5
(-1.6)
P 		279
avr 350.4
(3) 		305.7
(1.5) 		172.5
(-2.9) 		168.5
(-3) 		275.6
(0.5) 		219.8
(-1.3) 		182
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174805_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20463
Sequence Type Exemplar sequence
Representative Public ID CEK024B2R NCBI
Target Description CEK024B2R_rc /REP_DB=TREMBL Accession /GB=D32960 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk24b2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058371(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058371 NCBI Caenorhabditis elegans Y18H1A.3 (Y18H1A.3) mRNA, complete cds. 11/11 None
Y18H1A.3 ENSEMBL cdna:known chromosome:CEL140:I:700292:708243:-1 gene:Y18H1A.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:700301-700658(-) 93.56 100.0
Public Domain and Genome References
Gene Title
Ensembl Y18H1A.3
Entrez Gene 171663 Entrez gene
SwissProt Q9BL92 EMBL-EBI
WormBase CE26959 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_490772 Y18H1A.3 [Caenorhabditis elegans] gb|AAK21507.1| Hypothetical protein Y18H1A.3 [Caenorhabditis elegans] 0.0
blast CAE61317 Hypothetical protein CBG05152 [Caenorhabditis briggsae] 0.0
blast XP_780053 PREDICTED: similar to GTPase activating Rap/RanGAP domain-like 1 isoform 1 [Strongylocentrotus purpuratus] 6.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR000331 EMBL-EBI Rap/ran-GAP 1.3E-12
Sequence
Target Sequence 
>C. ELEGANS:174805_AT
tccgacaatttaattatttcccattttttgccccgaatatattatattttattaatttgt
tcattttccccctccaaaaattgctttatcccaagtctgctccggatcaattttgctata
aaaattatcgatttttggaaattatcacccaaaaatcgataattttgtgaagaaatttcc
ccccgcgcctttttttgtaaattttccttatatttattgtgattttcctctgaaaaatgt
gatattttcccccttctccacggcaaccgaaacaaaaaaaaattatgtgatataaccccc
aatgcgacataat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCGACAATTTAATTATTTCCCATT 555 595 22 Antisense
TCCCATTTTTTGCCCCGAATATATT 641 597 40 Antisense
AAATTGCTTTATCCCAAGTCTGCTC 83 115 99 Antisense
TTATCCCAAGTCTGCTCCGGATCAA 255 679 107 Antisense
GTCTGCTCCGGATCAATTTTGCTAT 492 471 116 Antisense
TGGAAATTATCACCCAAAAATCGAT 400 547 157 Antisense
AATTTTCCTTATATTTATTGTGATT 354 175 221 Antisense
TATTTATTGTGATTTTCCTCTGAAA 220 663 232 Antisense
TGAAAAATGTGATATTTTCCCCCTT 513 569 252 Antisense
TTATGTGATATAACCCCCAATGCGA 518 681 304 Antisense
GATATAACCCCCAATGCGACATAAT 137 427 310 Antisense
Sequence Source Affymetrix Proprietary Database