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[174803_at]

Description CEK047G5R_rc /REP_DB=TREMBL Accession /GB=D64230 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk47g5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 0      4grp_highest_8_8 > 58      4grp_high_8_8 > 33      6grp_highest_nonorm > 31      6grp_total > 04      4grp_total > 47      6grp_cgc > 50      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1084
1 2 3 4 range
A 1277.4
(3)
P 		467.4
(-2.2)
P 		350.4
(-3)
P 		436.9
(-2.4)
P 		927
B 835.9
(3)
P 		277.5
(-2.2)
P 		193
(-3)
P 		326.5
(-1.8)
P 		643
C 1138.2
(3)
P 		488.4
(-1.2)
P 		327.1
(-2.3)
P 		217.6
(-3)
P 		921
avr 1083.8
(3) 		411.1
(-2.1) 		290.2
(-3) 		327
(-2.7) 		794

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1157
1 2 3 4 5 6 range
A 1323.7
(3)
P 		958.9
(0.2)
P 		756.1
(-1.4)
P 		882.5
(-0.4)
P 		1007.3
(0.6)
P 		544.6
(-3)
P 		779
B 1503.4
(3)
P 		971.1
(-0.1)
P 		744.7
(-1.5)
P 		1064.4
(0.4)
P 		743.6
(-1.5)
P 		481.1
(-3)
P 		1022
C 1149.4
(3)
P 		1096.9
(2.6)
P 		954.7
(1.5)
P 		1145.3
(3)
P 		823.9
(0.6)
P 		346.1
(-3)
P 		803
avr 1325.5
(3) 		1009
(0.8) 		818.5
(-0.5) 		1030.7
(1) 		858.3
(-0.2) 		457.3
(-3) 		868
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 428
1 2 3 4 range
A 465.1
(3)
P 		101.5
(-2.4)
P 		91.6
(-2.6)
P 		63.9
(-3)
P 		401
B 266.5
(3)
P 		68.5
(-2.4)
P 		44.7
(-3)
P 		69.6
(-2.3)
P 		222
C 376.8
(3)
P 		140.4
(-1.2)
P 		114
(-1.6)
P 		36.7
(-3)
P 		340
avr 369.5
(3) 		103.5
(-2.1) 		83.4
(-2.5) 		56.7
(-3) 		313

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 407
1 2 3 4 5 6 range
A 244
(0.2)
P 		341
(3)
P 		164.7
(-2.1)
P 		223.8
(-0.4)
P 		304
(1.9)
P 		132.6
(-3)
P 		208
B 523.1
(3)
P 		323.2
(-0.5)
P 		180.8
(-3)
P 		281.9
(-1.2)
P 		302.1
(-0.9)
P 		179.4
(-3)
P 		344
C 426
(3)
P 		334.7
(1.2)
P 		243
(-0.5)
P 		230.3
(-0.8)
P 		266.6
(-0.1)
P 		115.9
(-3)
P 		310
avr 397.7
(3) 		333
(1.5) 		196.2
(-1.7) 		245.3
(-0.6) 		290.9
(0.5) 		142.6
(-3) 		255
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174803_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22091
Sequence Type Exemplar sequence
Representative Public ID CEK047G5R NCBI
Target Description CEK047G5R_rc /REP_DB=TREMBL Accession /GB=D64230 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk47g5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029607(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029607 NCBI Caenorhabditis elegans neuRonal IGCAM family member (rig-1) (rig-1) mRNA, complete cds. 11/11 None
K09E2.4a ENSEMBL cdna:known chromosome:CEL140:X:8661232:8671724:1 gene:K09E2.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181115 2 1 NM_001029607 174803_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8671319-8671713(+) 100.0 100.0
Public Domain and Genome References
Ensembl K09E2.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC46575 Neuronal igcam protein 1, isoform a [Caenorhabditis elegans] ref|NP_001024778.1| neuRonal IGCAM family member (rig-1) [Caenorhabditis elegans] 0.0
blast CAE69345 Hypothetical protein CBG15423 [Caenorhabditis briggsae] 0.0
blast AAP40525 Neuronal igcam protein 1, isoform b [Caenorhabditis elegans] ref|NP_001024779.1| neuRonal IGCAM family member (rig-1) [Caenorhabditis elegans] 1.0E-161
Protein Domains
Database ID Description E-Value
Pfam IPR003961 EMBL-EBI Fibronectin, type III 1.2E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.1
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 0.22
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 4.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024778.1 1 898-920
K09E2.4a 1 898-920
Sequence
Target Sequence 
>C. ELEGANS:174803_AT
ccatcaattttctattcgggttcctcaagtcaatccacgtgtttccaatcgaaatcccgt
ttttctttgcacttatcccatatactcgttgaaggaatagctttaattttgaatattcat
aatttctcttcaagttttgtattatgcacgggtcttcaacaatgtccaattggagatgta
gttaattgcaaataattatttatctgtttcaatttgctattatgcatgttatatcttaac
ccgtaaagatctctcttgagaccaccagccacttattttcagttcattgccgattcttgt
ttaatttagaatgttgctatgcacaatgttatttttgcttgtacttgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CCATCAATTTTCTATTCGGGTTCCT 39 271 13 Antisense
TCTATTCGGGTTCCTCAAGTCAATC 47 603 23 Antisense
GTCAATCCACGTGTTTCCAATCGAA 699 463 41 Antisense
TCGAAATCCCGTTTTTCTTTGCACT 238 601 61 Antisense
TGCACTTATCCCATATACTCGTTGA 600 575 80 Antisense
AGTTTTGTATTATGCACGGGTCTTC 64 63 145 Antisense
TGCACGGGTCTTCAACAATGTCCAA 636 575 157 Antisense
TATGCATGTTATATCTTAACCCGTA 359 657 233 Antisense
AAAGATCTCTCTTGAGACCACCAGC 318 123 257 Antisense
TTCAGTTCATTGCCGATTCTTGTTT 157 689 290 Antisense
AATGTTATTTTTGCTTGTACTTGAC 42 165 337 Antisense
Sequence Source Affymetrix Proprietary Database