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[174801_at]

Description CEK018F7R_rc /REP_DB=TREMBL Accession /GB=D32555 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18f7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 06      4grp_highest_8_8 > 61      4grp_high_8_8 > 17      6grp_highest_nonorm > 50      6grp_total > 14      4grp_total > 31      6grp_highest_sub > De      6grp_cgc > 21      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 414
1 2 3 4 range
A 696.5
(3)
P 		403
(-2.9)
P 		397.1
(-3)
P 		691.2
(2.9)
P 		299
B 676.3
(3)
P 		425.8
(-0.8)
P 		282.9
(-3)
P 		452.7
(-0.4)
P 		393
C 690.4
(3)
P 		403.8
(-2.2)
P 		358
(-3)
P 		513.1
(-0.2)
P 		332
avr 687.7
(3) 		410.9
(-1.9) 		346
(-3) 		552.3
(0.6) 		342

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 575
1 2 3 4 5 6 range
A 723.6
(3)
P 		501.7
(0.1)
P 		523.1
(0.4)
P 		312.4
(-2.4)
P 		374.9
(-1.6)
P 		267
(-3)
P 		457
B 842
(3)
P 		637.2
(0.7)
P 		447.8
(-1.5)
P 		489.1
(-1)
P 		310.7
(-3)
P 		401.1
(-2)
P 		531
C 658.6
(3)
P 		573.4
(1.3)
P 		441.8
(-1.3)
P 		575.6
(1.3)
P 		358.4
(-3)
P 		370.5
(-2.8)
P 		300
avr 741.4
(3) 		570.8
(0.4) 		470.9
(-1.1) 		459
(-1.3) 		348
(-3) 		346.2
(-3) 		395
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 253.6
(3)
P 		87.5
(-3)
P 		103.8
(-2.4)
P 		101.2
(-2.5)
P 		166
B 215.7
(3)
P 		105.2
(-1.4)
P 		65.6
(-3)
P 		96.5
(-1.8)
P 		150
C 228.5
(3)
P 		116.1
(-1.7)
P 		124.8
(-1.4)
P 		86.5
(-3)
P 		142
avr 232.6
(3) 		102.9
(-2.6) 		98.1
(-2.9) 		94.7
(-3) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 228
1 2 3 4 5 6 range
A 133.4
(0.6)
P 		178.4
(3)
P 		113.9
(-0.4)
P 		79.2
(-2.2)
P 		113.1
(-0.5)
P 		65
(-3)
P 		113
B 293
(3)
P 		212.1
(0.4)
P 		108.7
(-3)
P 		129.5
(-2.3)
P 		126.2
(-2.4)
P 		149.6
(-1.7)
P 		184
C 244.1
(3)
P 		174.9
(-0.2)
P 		112.4
(-3)
P 		115.8
(-2.8)
P 		116
(-2.8)
P 		124
(-2.5)
P 		132
avr 223.5
(3) 		188.5
(1.2) 		111.7
(-2.8) 		108.2
(-3) 		118.4
(-2.5) 		112.9
(-2.8) 		115
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174801_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21541
Sequence Type Exemplar sequence
Representative Public ID CEK018F7R NCBI
Target Description CEK018F7R_rc /REP_DB=TREMBL Accession /GB=D32555 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk18f7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027988(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027988 NCBI Caenorhabditis elegans abnormal DAuer Formation family member (daf-1) (daf-1) mRNA, complete cds. 11/11 None
F29C4.1a ENSEMBL cdna:known chromosome:CEL140:IV:132416:138291:1 gene:F29C4.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
176829 2 1 NM_001027988 174801_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:137681-138057(+) 89.36 100.0
Public Domain and Genome References
Ensembl F29C4.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP82657 Abnormal dauer formation protein 1, isoform a [Caenorhabditis elegans] ref|NP_001023159.1| abnormal DAuer Formation family member (daf-1) [Caenorhabditis elegans] sp|P20792|DAF1_CAEEL Cell-surface receptor daf-1 precursor (Abnormal dauer formation protein 1) gb|AAA28001.1| serine/threonine protein kinase (daf-1) precursor 0.0
blast AAC19189 Abnormal dauer formation protein 1, isoform b [Caenorhabditis elegans] ref|NP_001023160.1| abnormal DAuer Formation family member (daf-1) [Caenorhabditis elegans] 0.0
blast CAE58501 Hypothetical protein CBG01651 [Caenorhabditis briggsae] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 1.6E-36
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001023159.1 1 170-192
F29C4.1a 1 170-192
Sequence
Target Sequence 
>C. ELEGANS:174801_AT
tatactacacttatcacctctcgtgacttcctcccacccccatatcgatgatctcatttc
tcttcctcaaccactaactgtctgctacctatttcttgtttattagcgggtgcattatgc
agctaattgtccggcgccccatcattctaaaagagactcctcaccgtgtacctcagaaaa
acataaaaatcttgtgataggtatgtactgcataagctttattaccctcccccgaaactt
tgtagtttgtagtttaccctgttttttttctgtaccatgatttcaagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATACTACACTTATCACCTCTCGTG 112 661 16 Antisense
CACCCCCATATCGATGATCTCATTT 324 201 50 Antisense
TATTTCTTGTTTATTAGCGGGTGCA 153 659 105 Antisense
GTTTATTAGCGGGTGCATTATGCAG 636 447 113 Antisense
CATTATGCAGCTAATTGTCCGGCGC 78 215 128 Antisense
GGCGCCCCATCATTCTAAAAGAGAC 492 541 148 Antisense
TAAAAGAGACTCCTCACCGTGTACC 608 639 163 Antisense
TCCTCACCGTGTACCTCAGAAAAAC 340 593 173 Antisense
AATCTTGTGATAGGTATGTACTGCA 376 169 203 Antisense
TACTGCATAAGCTTTATTACCCTCC 566 645 221 Antisense
TTTTTTCTGTACCATGATTTCAAGT 686 673 279 Antisense
Sequence Source Affymetrix Proprietary Database