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[174798_at]

Description CEK010D9R_rc /REP_DB=TREMBL Accession /GB=D32313 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10d9 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 68      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 82      6grp_total > 69      4grp_total > 63      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 472.8
(3)
P 		332.2
(-2.6)
P 		451.5
(2.2)
P 		321.7
(-3)
P 		151
B 514.8
(3)
P 		343.3
(-3)
P 		435.6
(0.2)
P 		405
(-0.8)
P 		172
C 540.9
(3)
P 		361.8
(-3)
P 		419.7
(-1.1)
P 		389
(-2.1)
P 		179
avr 509.5
(3) 		345.8
(-3) 		435.6
(0.3) 		371.9
(-2) 		164

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 360
1 2 3 4 5 6 range
A 352.6
(-0.5)
P 		360.5
(-0.2)
P 		292.1
(-2.9)
P 		289.4
(-3)
P 		439.3
(3)
P 		430.3
(2.6)
P 		150
B 410.6
(-0.7)
P 		334.7
(-2.2)
P 		293.1
(-3)
P 		355.7
(-1.8)
P 		328
(-2.3)
P 		596.5
(3)
P 		303
C 413.7
(0.1)
P 		340.3
(-1.2)
P 		274.2
(-2.3)
P 		236.6
(-3)
P 		333.3
(-1.3)
P 		574
(3)
P 		337
avr 392.3
(-0.4) 		345.2
(-1.6) 		286.5
(-3) 		293.9
(-2.8) 		366.9
(-1) 		533.6
(3) 		247
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 132
1 2 3 4 range
A 172.1
(3)
P 		72.1
(-1.8)
P 		118
(0.4)
P 		47.1
(-3)
P 		125
B 164.2
(3)
P 		84.8
(-3)
P 		100.9
(-1.8)
P 		86.3
(-2.9)
P 		79
C 179
(3)
P 		104
(-1)
P 		146.3
(1.3)
P 		65.6
(-3)
P 		113
avr 171.8
(3) 		87
(-1.8) 		121.7
(0.2) 		66.3
(-3) 		106

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 175
1 2 3 4 5 6 range
A 65
(-2.9)
P 		128.2
(2.6)
P 		63.6
(-3)
P 		73.4
(-2.1)
P 		132.6
(3)
P 		104.8
(0.6)
P 		69
B 142.9
(-0.2)
P 		111.4
(-1.4)
P 		71.2
(-3)
P 		94.2
(-2.1)
P 		133.3
(-0.5)
P 		222.4
(3)
P 		151
C 153.3
(1.4)
P 		103.8
(-0.7)
P 		69.8
(-2.1)
P 		47.6
(-3)
P 		107.8
(-0.5)
P 		192.2
(3)
P 		145
avr 120.4
(-0) 		114.5
(-0.4) 		68.2
(-3) 		71.7
(-2.8) 		124.6
(0.2) 		173.1
(3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174798_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20207
Sequence Type Exemplar sequence
Representative Public ID CEK010D9R NCBI
Target Description CEK010D9R_rc /REP_DB=TREMBL Accession /GB=D32313 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk10d9 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059123(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059123 NCBI Caenorhabditis elegans Y110A7A.16 (Y110A7A.16) mRNA, complete cds. 11/11 A 
GENEFINDER00000029238 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5110142:5118850:-1 9/11 None
SNAP00000029207 ENSEMBL cdna:SNAP chromosome:CEL140:I:5114202:5118850:-1 11/11 None
Y110A7A.16 ENSEMBL cdna:known chromosome:CEL140:I:5113700:5118850:-1 gene:Y110A7A.16 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5114147-5114868(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y110A7A.16
Entrez Gene 172143 Entrez gene
SwissProt Q9N595 EMBL-EBI
WormBase CE28103 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60430 Hypothetical protein Y110A7A.16 [Caenorhabditis elegans] ref|NP_491524.1| Y110A7A.16 [Caenorhabditis elegans] 0.0
blast CAE65740 Hypothetical protein CBG10825 [Caenorhabditis briggsae] 0.0
blast AAF60429 Hypothetical protein Y110A7A.15a [Caenorhabditis elegans] ref|NP_491523.2| Y110A7A.15a [Caenorhabditis elegans] 0.0
blast EAA71039 hypothetical protein FG04361.1 [Gibberella zeae PH-1] ref|XP_384537.1| hypothetical protein FG04361.1 [Gibberella zeae PH-1] 4.0E-50
Protein Domains
Database ID Description E-Value
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Pfam IPR006849 EMBL-EBI IKI3 family 1.0E-126
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000029238 5 1283-1305,1843-1865,1870-1892,1905-1927,1937-1959
Sequence
Target Sequence 
>C. ELEGANS:174798_AT
gagctatcccaattgattctagttttgataacagttggaaacttcccagaatctcttaaa
ttgagaagcgcttatgatgaatttgccacgaagcttcagaaaagcaaagctgcaatctgg
cctgaaagcctgtcggttcagcatcttccaggaccacttcatgcactgtttgacccaaac
caagagccgtcgcctatcccaatgcctcccatattccggcttgaacctgaacttgtcgct
cctacatcttcatttgcttcagttttcccataa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTATCCCAATTGATTCTAGTTT 50 389 103 Antisense
GGAAACTTCCCAGAATCTCTTAAAT 505 527 139 Antisense
GAAGCGCTTATGATGAATTTGCCAC 189 343 167 Antisense
AAGCAAAGCTGCAATCTGGCCTGAA 69 151 204 Antisense
ATCTGGCCTGAAAGCCTGTCGGTTC 217 35 217 Antisense
CCTGTCGGTTCAGCATCTTCCAGGA 588 265 231 Antisense
CCAGGACCACTTCATGCACTGTTTG 121 273 250 Antisense
TGTTTGACCCAAACCAAGAGCCGTC 154 561 269 Antisense
ATTCCGGCTTGAACCTGAACTTGTC 466 7 315 Antisense
CTCCTACATCTTCATTTGCTTCAGT 394 235 341 Antisense
TTCATTTGCTTCAGTTTTCCCATAA 386 689 351 Antisense
Sequence Source Affymetrix Proprietary Database