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[174797_at]

Description CEK013B4R_rc /REP_DB=TREMBL Accession /GB=D27546 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk13b4 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 40      4grp_high_8_8 > 42      6grp_highest_nonorm > 41      6grp_total > 25      4grp_total > 53      6grp_highest_sub > 01_02      6grp_high1_sub > 01_02      6grp_total_sub > Decrease      6grp_rule_based > S2      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 531
1 2 3 4 range
A 873.4
(3)
P 		630.3
(-1.9)
P 		575
(-3)
P 		622.9
(-2)
P 		298
B 852.6
(3)
P 		853
(3)
P 		756.9
(1.1)
P 		553
(-3)
P 		300
C 928.5
(3)
P 		829.1
(1.9)
P 		774.2
(1.3)
P 		397.8
(-3)
P 		531
avr 884.8
(3) 		770.8
(1.1) 		702
(-0) 		524.6
(-3) 		360

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 689
1 2 3 4 5 6 range
A 989.6
(3)
P 		986.7
(3)
P 		640
(-0.7)
P 		415.7
(-3)
P 		582.4
(-1.3)
P 		452.3
(-2.6)
P 		574
B 1045.7
(2.9)
P 		1059.2
(3)
P 		633.9
(-1.4)
P 		761.6
(-0.1)
P 		480.6
(-3)
P 		628.8
(-1.5)
P 		579
C 875.2
(1.5)
P 		1049
(3)
P 		677.1
(-0.3)
P 		370.3
(-3)
P 		562.2
(-1.3)
P 		558.5
(-1.3)
P 		679
avr 970.2
(2.3) 		1031.6
(3) 		650.3
(-1.4) 		515.9
(-3) 		541.7
(-2.7) 		546.5
(-2.6) 		516
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 251
1 2 3 4 range
A 318
(3)
P 		136.8
(-1.8)
P 		150.3
(-1.4)
P 		91.2
(-3)
P 		227
B 271.9
(3)
P 		210.7
(0.6)
P 		175.4
(-0.8)
P 		117.8
(-3)
P 		154
C 307.4
(3)
P 		238.4
(1.3)
P 		269.8
(2.1)
P 		67.1
(-3)
P 		240
avr 299.1
(3) 		195.3
(-0) 		198.5
(0.1) 		92
(-3) 		207

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 182.4
(-1.1)
P 		350.9
(3)
P 		139.4
(-2.2)
P 		105.4
(-3)
P 		175.7
(-1.3)
P 		110.1
(-2.9)
P 		246
B 363.9
(3)
P 		352.6
(2.7)
P 		153.9
(-3)
P 		201.7
(-1.6)
P 		195.3
(-1.8)
P 		234.5
(-0.7)
P 		210
C 324.4
(3)
P 		320.1
(2.9)
P 		172.3
(-0.7)
P 		74.5
(-3)
P 		181.9
(-0.4)
P 		187
(-0.3)
P 		250
avr 290.2
(1.6) 		341.2
(3) 		155.2
(-2.2) 		127.2
(-3) 		184.3
(-1.4) 		177.2
(-1.6) 		214
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174797_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22467
Sequence Type Exemplar sequence
Representative Public ID CEK013B4R NCBI
Target Description CEK013B4R_rc /REP_DB=TREMBL Accession /GB=D27546 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk13b4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
H11E01.3 ENSEMBL cdna:known chromosome:CEL140:X:1610303:1619134:1 gene:H11E01.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:1618712-1619124(+) 100.0 100.0
Public Domain and Genome References
Ensembl H11E01.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC17017 Hypothetical protein H11E01.3 [Caenorhabditis elegans] ref|NP_508299.2| H11E01.3 [Caenorhabditis elegans] 0.0
blast CAE70008 Hypothetical protein CBG16422 [Caenorhabditis briggsae] 0.0
blast CAE64691 Hypothetical protein CBG09473 [Caenorhabditis briggsae] 5.0E-15
Sequence
Target Sequence 
>C. ELEGANS:174797_AT
tccttcgtcggggagtgctgaaatttctaaattcttgcagaattaaagcatttccctctc
gttgacaaattattagaattaattgcacctagttttcacactcctcccttacgtcttctg
aggtttcaaatctggagttgcgcatcagcaaaatcttgtgattttcttgtacccctgtct
tccttttccgctggttttgcttcctatgcttagctttaaccaccttctttttcaatttat
ttgctccgagaattttaatttttggttattactcttattatttagtatttaaagtttttg
acagcaaaaattaaccgtttctattgtaacttcttccttgtctgtctcttgatgctttct
gtggtgtggtggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTCGTCGGGGAGTGCTGAAATT 475 587 13 Antisense
AGAATTAAAGCATTTCCCTCTCGTT 539 75 51 Antisense
CATTTCCCTCTCGTTGACAAATTAT 380 215 61 Antisense
TAATTGCACCTAGTTTTCACACTCC 9 635 92 Antisense
CTCCCTTACGTCTTCTGAGGTTTCA 576 199 116 Antisense
TCAAATCTGGAGTTGCGCATCAGCA 289 627 138 Antisense
AATCTTGTGATTTTCTTGTACCCCT 216 171 164 Antisense
GCTTCCTATGCTTAGCTTTAACCAC 276 307 211 Antisense
GACAGCAAAAATTAACCGTTTCTAT 434 365 312 Antisense
TCTATTGTAACTTCTTCCTTGTCTG 367 615 332 Antisense
TTGATGCTTTCTGTGGTGTGGTGGT 287 705 361 Antisense
Sequence Source Affymetrix Proprietary Database