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[174792_s_at]

Description CEK014E8R_rc /REP_DB=TREMBL Accession /GB=D27582 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14e8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 34      4grp_highest_8_8 > 44      4grp_high_8_8 > 08      6grp_highest_nonorm > 73      6grp_total > 0      4grp_total > 31      6grp_total_sub > Hat      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 310
1 2 3 4 range
A 699.2
(3)
P 		456.2
(-2.9)
P 		451.9
(-3)
P 		578.8
(0.1)
P 		247
B 529.6
(-2.8)
P 		618.9
(3)
P 		527.1
(-3)
P 		552.2
(-1.4)
P 		92
C 578.1
(3)
P 		388.8
(-3)
P 		542.6
(1.9)
P 		542.2
(1.9)
P 		189
avr 602.3
(3) 		488
(-3) 		507.2
(-2) 		557.7
(0.7) 		114

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 415
1 2 3 4 5 6 range
A 507.5
(-3)
P 		555
(-1.6)
P 		522.1
(-2.6)
P 		707.6
(3)
P 		701.3
(2.8)
P 		644.3
(1.1)
P 		200
B 490.4
(-2.3)
P 		765.7
(3)
P 		452.5
(-3)
P 		577.4
(-0.6)
P 		457.5
(-2.9)
P 		576.5
(-0.6)
P 		313
C 371.1
(-3)
P 		785.8
(3)
P 		530.2
(-0.7)
P 		495.5
(-1.2)
P 		503.2
(-1.1)
P 		462.1
(-1.7)
P 		415
avr 456.3
(-3) 		702.2
(3) 		501.6
(-1.9) 		593.5
(0.3) 		554
(-0.6) 		561
(-0.4) 		246
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 170
1 2 3 4 range
A 254.6
(3)
P 		99
(-2.5)
P 		118.1
(-1.8)
P 		84.7
(-3)
P 		170
B 168.9
(3)
P 		152.9
(1.1)
P 		122.1
(-2.5)
P 		117.7
(-3)
P 		51
C 191.4
(3)
P 		111.8
(-1.8)
P 		189.1
(2.9)
P 		91.4
(-3)
P 		100
avr 205
(3) 		121.2
(-1.7) 		143.1
(-0.5) 		97.9
(-3) 		107

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 93.6
(-3)
P 		197.4
(2.3)
P 		113.7
(-2)
P 		179.5
(1.4)
P 		211.6
(3)
P 		156.9
(0.2)
P 		118
B 170.6
(-0.5)
P 		254.9
(3)
P 		109.9
(-3)
P 		152.9
(-1.2)
P 		185.9
(0.1)
P 		215
(1.3)
P 		145
C 137.6
(-1.4)
P 		239.8
(3)
P 		135
(-1.5)
P 		99.6
(-3)
P 		162.8
(-0.3)
P 		154.7
(-0.6)
P 		140
avr 133.9
(-2.2) 		230.7
(3) 		119.5
(-3) 		144
(-1.7) 		186.8
(0.6) 		175.5
(0) 		111
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174792_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21065
Sequence Type Exemplar sequence
Representative Public ID CEK014E8R NCBI
Target Description CEK014E8R_rc /REP_DB=TREMBL Accession /GB=D27582 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk14e8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066520(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066520 NCBI Caenorhabditis elegans B0303.11 (B0303.11) mRNA, complete cds. 11/11 A 
SNAP00000042408 ENSEMBL cdna:SNAP chromosome:CEL140:III:8700827:8709469:-1 10/11 None
GENEFINDER00000042422 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8703347:8709954:-1 11/11 None
B0303.11 ENSEMBL cdna:known chromosome:CEL140:III:8703204:8710016:-1 gene:B0303.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8703218-8703702(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0303.11
Entrez Gene 176222 Entrez gene
SwissProt P34261 EMBL-EBI
WormBase CE36777 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6810 transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27902 Hypothetical protein B0303.11 [Caenorhabditis elegans] ref|NP_498921.2| B0303.11 [Caenorhabditis elegans] sp|P34261|YKAA_CAEEL Putative amino-acid permease B0303.11 0.0
blast CAE69286 Hypothetical protein CBG15341 [Caenorhabditis briggsae] 0.0
blast S27793 hypothetical protein 4 (cosmid B0303) - Caenorhabditis elegans 1.0E-103
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498921.2 10 53-75,96-118,142-159,166-188,213-235,244-266,286-308,365-387,397-416,421-440
B0303.11 10 53-75,96-118,142-159,166-188,213-235,244-266,286-308,365-387,397-416,421-440
SNAP00000042408 10 22-44,65-87,111-128,135-157,182-204,213-235,255-277,334-356,366-385,390-409
GENEFINDER00000042422 10 72-94,120-142,166-183,190-212,237-259,268-290,310-332,389-411,421-440,445-464
Sequence
Target Sequence 
>C. ELEGANS:174792_S_AT
gaagactagaagcttcttgcgtgcatcggaacttattcgagaacacagttcagatgctga
tctgattgtttgtactcttccatcagctcgtcctgaaatcccatcaccaatttatctcgg
atggatcgatatgctctcccgtcagacacccccgacatgccttgtacgtggaaatcaagt
ctcgatgagtgctcttcgtttgaaattcccgta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACTAGAAGCTTCTTGCGTGCA 406 339 63 Antisense
AAGCTTCTTGCGTGCATCGGAACTT 57 149 72 Antisense
GCATCGGAACTTATTCGAGAACACA 390 283 85 Antisense
GAGAACACAGTTCAGATGCTGATCT 303 393 101 Antisense
GCTGATCTGATTGTTTGTACTCTTC 31 297 118 Antisense
TGATTGTTTGTACTCTTCCATCAGC 16 565 125 Antisense
GAAATCCCATCACCAATTTATCTCG 113 363 157 Antisense
TCGGATGGATCGATATGCTCTCCCG 185 607 179 Antisense
CCCGACATGCCTTGTACGTGGAAAT 391 261 213 Antisense
CAAGTCTCGATGAGTGCTCTTCGTT 584 183 238 Antisense
GTGCTCTTCGTTTGAAATTCCCGTA 198 473 251 Antisense
Sequence Source Affymetrix Proprietary Database