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[174790_at]

Description CEK072F8R_rc /REP_DB=TREMBL Accession /GB=D66038 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk72f8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 13      6grp_high1_10_10 > 02      4grp_highest_8_8 > 42      4grp_high_8_8 > 41      6grp_highest_nonorm > 57      6grp_total > 44      4grp_total > 54      6grp_cgc > 80      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1361
1 2 3 4 range
A 3290
(3)
P 		2738
(0.6)
P 		2502.3
(-0.5)
P 		1929.3
(-3)
P 		1361
B 3037.1
(3)
P 		2583.4
(-3)
P 		2787
(-0.3)
P 		2666
(-1.9)
P 		454
C 3121.8
(3)
P 		2592.8
(-2.3)
P 		2696.8
(-1.3)
P 		2525.1
(-3)
P 		597
avr 3149.6
(3) 		2638.1
(-1) 		2662
(-0.8) 		2373.5
(-3) 		776

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 975
1 2 3 4 5 6 range
A 2355.1
(-1.8)
P 		2800.7
(2.8)
P 		2824
(3)
P 		2236
(-3)
P 		2341.4
(-1.9)
P 		2324.2
(-2.1)
P 		588
B 2604.3
(0)
P 		2423.9
(-2.6)
P 		2814.5
(3)
P 		2628.6
(0.4)
P 		2392.6
(-3)
P 		2398.6
(-2.9)
P 		422
C 3181.7
(3)
P 		2206.7
(-3)
P 		2514.2
(-1.1)
P 		2413.7
(-1.7)
P 		2402.9
(-1.8)
P 		2753.8
(0.4)
P 		975
avr 2713.7
(2.9) 		2477.1
(-1.3) 		2717.6
(3) 		2426.1
(-2.2) 		2379
(-3) 		2492.2
(-1) 		339
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 916
1 2 3 4 range
A 1197.9
(3)
P 		594.3
(-1)
P 		654.2
(-0.6)
P 		282.4
(-3)
P 		916
B 968.5
(3)
P 		638
(-2)
P 		645.8
(-1.8)
P 		568.1
(-3)
P 		400
C 1033.4
(3)
P 		745.4
(0.2)
P 		939.9
(2.1)
P 		425.8
(-3)
P 		608
avr 1066.6
(3) 		659.2
(-0.8) 		746.6
(0) 		425.4
(-3) 		641

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 745
1 2 3 4 5 6 range
A 434.2
(-3)
P 		996.1
(3)
P 		615
(-1.1)
P 		567.1
(-1.6)
P 		706.5
(-0.1)
P 		565.9
(-1.6)
P 		562
B 906.2
(1.6)
P 		806.8
(-0.4)
P 		683.4
(-3)
P 		696.2
(-2.7)
P 		972.1
(3)
P 		894.4
(1.4)
P 		289
C 1179.3
(3)
P 		673.3
(-1.4)
P 		639.9
(-1.7)
P 		485.4
(-3)
P 		777.6
(-0.5)
P 		921.8
(0.8)
P 		694
avr 839.9
(3) 		825.4
(2.7) 		646.1
(-1.5) 		582.9
(-3) 		818.7
(2.5) 		794
(1.9) 		257
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174790_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21706
Sequence Type Exemplar sequence
Representative Public ID CEK072F8R NCBI
Target Description CEK072F8R_rc /REP_DB=TREMBL Accession /GB=D66038 /CHR=5 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk72f8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028671(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028671 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-93) (tag-93) mRNA, complete cds. 11/11 None
F25D1.1a ENSEMBL cdna:known chromosome:CEL140:V:10535475:10538816:-1 gene:F25D1.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
179469 2 1 NM_001028671 174790_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:10535507-10535840(-) 100.0 100.0
Public Domain and Genome References
Ensembl F25D1.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA98265 Hypothetical protein F25D1.1a [Caenorhabditis elegans] ref|NP_001023842.1| Temporarily Assigned Gene name family member (tag-93) [Caenorhabditis elegans] 0.0
blast CAE64837 Hypothetical protein CBG09633 [Caenorhabditis briggsae] 0.0
blast CAE54908 Hypothetical protein F25D1.1b [Caenorhabditis elegans] ref|NP_001023843.1| Temporarily Assigned Gene name family member (tag-93) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001932 EMBL-EBI Protein phosphatase 2C-like 2.4E-105
Sequence
Target Sequence 
>C. ELEGANS:174790_AT
atcaatcctagcattgtttcatttggaaaacgaaatttgtgccaattttctttctcatca
taccaaaatcttccacttgtttgttaagttatatctatatttcttcatcaatcatttaag
gttaattgttttatccgctcttttgcgaaaatagtattttctgtcaaattcacctacaaa
cactcccatcaagattcagaatatacccaaccaatcgttttccccctattctcgctgtta
tatttgtctaaatcgcaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCAATCCTAGCATTGTTTCATTTG 272 27 35 Antisense
ATTTGTGCCAATTTTCTTTCTCATC 136 19 69 Antisense
CTCATCATACCAAAATCTTCCACTT 318 229 88 Antisense
AAGTTATATCTATATTTCTTCATCA 26 157 120 Antisense
TTAATTGTTTTATCCGCTCTTTTGC 309 685 156 Antisense
TTATCCGCTCTTTTGCGAAAATAGT 698 677 165 Antisense
GTATTTTCTGTCAAATTCACCTACA 433 453 188 Antisense
CCTACAAACACTCCCATCAAGATTC 253 269 207 Antisense
TCAGAATATACCCAACCAATCGTTT 33 623 230 Antisense
CCCCTATTCTCGCTGTTATATTTGT 690 261 257 Antisense
GTTATATTTGTCTAAATCGCACCAA 460 447 271 Antisense
Sequence Source Affymetrix Proprietary Database