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[174789_at]

Description CEK063G3R_rc /REP_DB=TREMBL Accession /GB=D71216 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk63g3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 47      4grp_highest_8_8 > 0      4grp_high_8_8 > 44      6grp_highest_nonorm > 40      6grp_total > 47      4grp_total > 51      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1181
1 2 3 4 range
A 645.7
(0.4)
P 		1017.8
(3)
P 		841.3
(1.7)
P 		172.5
(-3)
P 		845
B 517
(-1.7)
P 		1353.6
(3)
P 		721.3
(-0.5)
P 		276.4
(-3)
P 		1077
C 619.8
(-0.5)
P 		1150
(3)
P 		606.3
(-0.6)
P 		244.6
(-3)
P 		905
avr 594.2
(-0.7) 		1173.8
(3) 		723
(0.1) 		231.2
(-3) 		943

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 813
1 2 3 4 5 6 range
A 1060.2
(3)
P 		715
(0.3)
P 		282.2
(-3)
P 		291.2
(-2.9)
P 		489.9
(-1.4)
P 		1016.3
(2.7)
P 		778
B 1094.7
(3)
P 		698.4
(0)
P 		454.9
(-1.8)
P 		348.7
(-2.6)
P 		292.9
(-3)
P 		972.3
(2.1)
P 		802
C 1012.6
(2.5)
P 		655.3
(-0.2)
P 		424.1
(-2)
P 		300.1
(-3)
P 		380.3
(-2.4)
P 		1071.3
(3)
P 		771
avr 1055.8
(3) 		689.6
(0) 		387.1
(-2.4) 		313.3
(-3) 		387.7
(-2.4) 		1020
(2.7) 		743
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 235.1
(3)
P 		220.9
(2.6)
P 		219.9
(2.6)
P 		25.2
(-3)
P 		210
B 164.9
(-0.7)
P 		334.3
(3)
P 		167.1
(-0.6)
P 		58.9
(-3)
P 		275
C 205.2
(0.4)
P 		330.6
(3)
P 		211.3
(0.5)
P 		41.2
(-3)
P 		289
avr 201.7
(0.8) 		295.3
(3) 		199.4
(0.7) 		41.8
(-3) 		254

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 321
1 2 3 4 5 6 range
A 195.4
(1.2)
P 		254.3
(3)
P 		61.5
(-3)
P 		73.9
(-2.6)
P 		147.8
(-0.3)
P 		247.4
(2.8)
P 		193
B 380.9
(3)
P 		232.5
(-0.1)
P 		110.5
(-2.6)
P 		92.4
(-3)
P 		119
(-2.4)
P 		362.6
(2.6)
P 		289
C 375.3
(3)
P 		200
(-0.3)
P 		107.9
(-2.1)
P 		60.4
(-3)
P 		123.1
(-1.8)
P 		358.6
(2.7)
P 		315
avr 317.2
(2.9) 		228.9
(0.7) 		93.3
(-2.6) 		75.6
(-3) 		130
(-1.7) 		322.9
(3) 		247
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174789_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20381
Sequence Type Exemplar sequence
Representative Public ID CEK063G3R NCBI
Target Description CEK063G3R_rc /REP_DB=TREMBL Accession /GB=D71216 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk63g3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059373(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059373 NCBI Caenorhabditis elegans T09B4.5a (T09B4.5) mRNA, complete cds. 11/11 None
T09B4.5a.1 ENSEMBL cdna:known chromosome:CEL140:I:6162206:6165556:1 gene:T09B4.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172300 2 1 NM_059373 174789_at (11), 180858_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:6165125-6165475(+) 100.0 100.0
Public Domain and Genome References
Ensembl T09B4.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB53007 Hypothetical protein T09B4.5a [Caenorhabditis elegans] ref|NP_491774.1| T09B4.5a [Caenorhabditis elegans] 1.0E-135
blast AAO21395 Hypothetical protein T09B4.5b [Caenorhabditis elegans] ref|NP_871836.1| T09B4.5b [Caenorhabditis elegans] 9.0E-41
blast CAE67404 Hypothetical protein CBG12890 [Caenorhabditis briggsae] 2.0E-15
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_491774.1 2 209-231,246-268
T09B4.5a.1 2 209-231,246-268
Sequence
Target Sequence 
>C. ELEGANS:174789_AT
tcaaccaccctgaaatactttgtaaattttttttccaaaatccctacttctctacttctc
tcctcactctcttctcactccaaaccaatgttcctttccgccaacccgtatgacgtgcat
ttctcgcaaaataattcggatcctttttttaaattttatcacaaaatgacactttagatc
tacactttcttcccgtcccacaaatccacgtatgcctttctgacaattcaattggacctc
tatttctcatactttctttcatatgttgtttctcacaaattctgatgaattctctaatgt
tctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCAACCACCCTGAAATACTTTGTAA 681 629 27 Antisense
TCACTCCAAACCAATGTTCCTTTCC 331 623 101 Antisense
GCCAACCCGTATGACGTGCATTTCT 352 277 126 Antisense
CCCGTATGACGTGCATTTCTCGCAA 181 261 131 Antisense
TTCTCGCAAAATAATTCGGATCCTT 494 693 147 Antisense
CAAAATGACACTTTAGATCTACACT 454 189 188 Antisense
CCACGTATGCCTTTCTGACAATTCA 513 273 232 Antisense
GACAATTCAATTGGACCTCTATTTC 615 363 248 Antisense
AATTGGACCTCTATTTCTCATACTT 547 177 256 Antisense
ATGTTGTTTCTCACAAATTCTGATG 475 47 289 Antisense
TCTGATGAATTCTCTAATGTTCTGT 39 609 307 Antisense
Sequence Source Affymetrix Proprietary Database