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[174787_at] ATPase

Description CEK044D5R_rc /REP_DB=TREMBL Accession /GB=D34325 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44d5 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 53      6grp_high1_10_10 > 34      4grp_highest_8_8 > 53      4grp_high_8_8 > 17      6grp_highest_nonorm > 74      6grp_total > 01      4grp_total > 31      6grp_highest_sub > 02      6grp_cgc > 53      6grp_high1_sub > 02      6grp_cgc_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 578
1 2 3 4 range
A 928.9
(3)
P 		491.9
(-2.6)
P 		464.2
(-3)
P 		912.4
(2.8)
P 		465
B 1042
(3)
P 		518.6
(-2.7)
P 		486.5
(-3)
P 		650.9
(-1.2)
P 		556
C 925.3
(3)
P 		486.7
(-3)
P 		497
(-2.9)
P 		769.3
(0.9)
P 		439
avr 965.4
(3) 		499.1
(-2.8) 		482.6
(-3) 		777.5
(0.7) 		483

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 448
1 2 3 4 5 6 range
A 650.7
(-0.9)
P 		915.7
(3)
P 		508
(-3)
P 		697.7
(-0.2)
P 		836.3
(1.8)
P 		777.2
(1)
P 		408
B 819.3
(0.5)
P 		955.9
(3)
P 		688.9
(-1.9)
P 		869.4
(1.4)
P 		625.9
(-3)
P 		745.5
(-0.8)
P 		330
C 751.3
(-0.7)
P 		888.2
(3)
P 		691.4
(-2.4)
P 		813.5
(1)
P 		791.5
(0.4)
P 		667.8
(-3)
P 		220
avr 740.4
(-0.7) 		919.9
(3) 		629.4
(-3) 		793.5
(0.4) 		751.2
(-0.5) 		730.2
(-0.9) 		291
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 231
1 2 3 4 range
A 338.2
(3)
P 		106.8
(-3)
P 		121.4
(-2.6)
P 		133.6
(-2.3)
P 		231
B 332.3
(3)
P 		128.1
(-2.6)
P 		112.7
(-3)
P 		138.7
(-2.3)
P 		220
C 306.3
(3)
P 		139.9
(-2.7)
P 		173.2
(-1.5)
P 		129.7
(-3)
P 		177
avr 325.6
(3) 		124.9
(-3) 		135.8
(-2.7) 		134
(-2.7) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 120
(-2.7)
P 		325.7
(3)
P 		110.6
(-3)
P 		176.9
(-1.2)
P 		252.4
(1)
P 		189.2
(-0.8)
P 		215
B 285.1
(1.7)
P 		318.2
(3)
P 		167.3
(-3)
P 		230.3
(-0.5)
P 		254.3
(0.5)
P 		278
(1.4)
P 		151
C 278.5
(3)
P 		271
(2.6)
P 		176
(-2.4)
P 		163.6
(-3)
P 		256.1
(1.8)
P 		223.6
(0.1)
P 		115
avr 227.9
(-0) 		305
(3) 		151.3
(-3) 		190.3
(-1.5) 		254.3
(1) 		230.3
(0.1) 		154
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174787_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20946
Sequence Type Exemplar sequence
Representative Public ID CEK044D5R NCBI
Target Description CEK044D5R_rc /REP_DB=TREMBL Accession /GB=D34325 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk44d5 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066962(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066962 NCBI Caenorhabditis elegans W09D10.2 (ATPase) mRNA, complete cds. 11/11 None
W09D10.2 ENSEMBL cdna:known chromosome:CEL140:III:10722035:10729320:-1 gene:W09D10.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:10722043-10722428(-) 100.0 100.0
Public Domain and Genome References
Gene Title ATPase
Gene Symbol tat-3
Ensembl W09D10.2
Entrez Gene 176498 Entrez gene
SwissProt O18182 EMBL-EBI
WormBase CE32952 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE_2:CFA.15944.1.A1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) cfa
CANINE_2:CFAAFFX.15806.1.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) cfa
DROSOPHILA_2:1633424_AT dm
DROSOPHILA_2:1629658_AT dm
DROSOPHILA_2:1629283_AT dm
DROSGENOME1:153232_AT dm
DROSGENOME1:146089_AT dm
CHICKEN:GGAAFFX.10727.2.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.3.S1_S_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.5.S1_S_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.8.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.9.S1_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
CHICKEN:GGAAFFX.10727.9.S1_S_AT similar to Potential phospholipid-transporting ATPase VA (P-locus fat-associated ATPase) gga
HG-U133_PLUS_2:214255_AT ATPase, Class V, type 10A hs
HG-U133A_2:214255_AT ATPase, Class V, type 10A hs
HG-U133A:214255_AT ATPase, Class V, type 10A hs
HG-U133_PLUS_2:214256_AT ATPase, Class V, type 10A hs
HG-U133A_2:214256_AT ATPase, Class V, type 10A hs
HG-U133A:214256_AT ATPase, Class V, type 10A hs
HU35KSUBC:RC_AA348821_AT ATPase, Class V, type 10A hs
U133_X3P:HS2.407513.1.S1_3P_S_AT ATPase, Class V, type 10A hs
U133_X3P:HS2.407513.1.S1_3P_AT ATPase, Class V, type 10A hs
U133_X3P:HS.44697.0.S2_3P_AT ATPase, Class V, type 10A hs
U133_X3P:HS.44697.0.S1_3P_AT ATPase, Class V, type 10A hs
U133_X3P:1568743_3P_AT ATPase, Class V, type 10A hs
HG-U133_PLUS_2:1568743_AT ATPase, Class V, type 10A hs
HG-U95AV2:39961_AT ATPase, Class V, type 10A hs
HG-U95D:76829_AT ATPase, Class V, type 10A hs
HG-U95C:53042_AT ATPase, Class V, type 10A hs
MOE430A:1452013_AT ATPase, class V, type 10A mm
MOUSE430A_2:1452013_AT ATPase, class V, type 10A mm
MOUSE430_2:1452013_AT ATPase, class V, type 10A mm
MOUSE430_2:1447272_S_AT ATPase, class V, type 10A mm
MOE430B:1447272_S_AT ATPase, class V, type 10A mm
MOUSE430_2:1447273_X_AT ATPase, class V, type 10A mm
MOE430B:1447273_X_AT ATPase, class V, type 10A mm
MG-U74BV2:110111_AT ATPase, class V, type 10A (Atp10a), mRNA mm
MU11KSUBB:MSA.33916.0_S_AT ATPase, class V, type 10A (Atp10a), mRNA mm
MU19KSUBA:TC17164_AT ATPase, class V, type 10A (Atp10a), mRNA mm
RG-U34B:RC_AA955993_AT ATPase, class V, type 10A (predicted) rn
RAE230B:1384556_AT ATPase, class V, type 10A (predicted) rn
RAT230_2:1384556_AT ATPase, class V, type 10A (predicted) rn
RAE230B:1385361_AT ATPase, class V, type 10A (predicted) rn
RAT230_2:1385361_AT ATPase, class V, type 10A (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6812 cation transport inferred from electronic annotation QuickGO AmiGO
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3824 catalytic activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
15662 ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism inferred from electronic annotation QuickGO AmiGO
16887 ATPase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07859 Hypothetical protein W09D10.2 [Caenorhabditis elegans] ref|NP_499363.2| W09D10.2 [Caenorhabditis elegans] 0.0
blast CAE71412 Hypothetical protein CBG18322 [Caenorhabditis briggsae] 0.0
blast EAL39256 ENSANGP00000026375 [Anopheles gambiae str. PEST] ref|XP_553923.1| ENSANGP00000026375 [Anopheles gambiae str. PEST] 0.0
Protein Families
Method ID Description E-Value
ec A10A_HUMAN (O60312) Potential phospholipid-transporting ATPase VA (EC 3.6.3.1) (ATPVA) (Aminophospholipid translocase VA) 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR005834 EMBL-EBI Haloacid dehalogenase-like hydrolase 2.0E-5
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499363.2 10 57-79,287-309,347-369,1038-1057,1064-1083,1093-1115,1143-1165,1175-1197,1210-1232,1252-1274
W09D10.2 10 57-79,287-309,347-369,1038-1057,1064-1083,1093-1115,1143-1165,1175-1197,1210-1232,1252-1274
Sequence
Target Sequence 
>C. ELEGANS:174787_AT
catcatcatcgcccaaatatcacatttccatgacaaatatctacatttctctcatttttt
tgtaccattttctctccacacacaaagcgagttttttctgccaatttcttctcaaactac
gggccattcttctcagcagtactgctcctctacttttttcccttcccattcgcataaatt
ctcacaaatttcgattcttgtgctcttttctgatgattcttcatcatattttactagatt
actcatcaattttatccattattttcccccgaactgtataatatcgcccgaagcatcccg
agtatttggcttttttgttctattgattacgagttttgtacgtgctccc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATCATCATCGCCCAAATATCACAT 550 213 14 Antisense
ATTTTCTCTCCACACACAAAGCGAG 319 13 80 Antisense
AGCGAGTTTTTTCTGCCAATTTCTT 48 77 99 Antisense
TTCTCAAACTACGGGCCATTCTTCT 636 691 122 Antisense
TCTTCTCAGCAGTACTGCTCCTCTA 497 617 141 Antisense
CTTCCCATTCGCATAAATTCTCACA 554 219 175 Antisense
AATTTCGATTCTTGTGCTCTTTTCT 300 175 200 Antisense
GTGCTCTTTTCTGATGATTCTTCAT 45 481 213 Antisense
TATAATATCGCCCGAAGCATCCCGA 576 659 290 Antisense
GCATCCCGAGTATTTGGCTTTTTTG 9 309 306 Antisense
GATTACGAGTTTTGTACGTGCTCCC 153 431 338 Antisense
Sequence Source Affymetrix Proprietary Database