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[174786_at]

Description CEK034G7R_rc /REP_DB=TREMBL Accession /GB=D33698 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34g7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 52      6grp_high1_10_10 > 25      4grp_highest_8_8 > 32      4grp_high_8_8 > 51      6grp_highest_nonorm > 40      6grp_total > 26      4grp_total > 52      6grp_highest_sub > 01_02      6grp_cgc > 04      6grp_high1_sub > 01_02      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 516
1 2 3 4 range
A 618.9
(3)
P 		587.6
(2.5)
P 		524.4
(1.6)
P 		217.2
(-3)
P 		402
B 671.9
(3)
P 		590.5
(2)
P 		426.7
(-0)
P 		188.7
(-3)
P 		483
C 480.7
(1.3)
P 		547.2
(2.1)
P 		614.1
(3)
P 		155.6
(-3)
P 		459
avr 590.5
(3) 		575.1
(2.8) 		521.7
(2) 		187.2
(-3) 		403

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 731
1 2 3 4 5 6 range
A 1012
(3)
P 		854.8
(1.3)
P 		445.1
(-3)
P 		461.7
(-2.8)
P 		540.2
(-2)
P 		704.2
(-0.3)
P 		567
B 893
(3)
P 		856.4
(2.6)
P 		281.2
(-3)
P 		561.4
(-0.3)
P 		419.4
(-1.6)
P 		513.7
(-0.7)
P 		612
C 801.3
(3)
P 		702
(1.7)
P 		472.4
(-1.3)
P 		401.7
(-2.2)
P 		552.8
(-0.2)
P 		338.2
(-3)
P 		463
avr 902.1
(3) 		804.4
(1.8) 		399.6
(-3) 		474.9
(-2.1) 		504.1
(-1.8) 		518.7
(-1.6) 		503
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 199
1 2 3 4 range
A 225.4
(3)
P 		127.5
(-0)
P 		137.1
(0.3)
P 		31.8
(-3)
P 		194
B 214.3
(3)
P 		145.8
(0.6)
P 		98.9
(-1)
P 		40.2
(-3)
P 		174
C 159.1
(1.2)
P 		157.3
(1.2)
P 		214
(3)
P 		26.2
(-3)
P 		188
avr 199.6
(3) 		143.5
(1) 		150
(1.2) 		32.7
(-3) 		167

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 242
1 2 3 4 5 6 range
A 186.6
(-0.4)
P 		304
(3)
P 		96.9
(-3)
P 		117.1
(-2.4)
P 		163
(-1.1)
P 		171.5
(-0.8)
P 		207
B 310.7
(3)
P 		285
(2.4)
P 		68.3
(-3)
P 		148.7
(-1)
P 		170.4
(-0.5)
P 		191.5
(0)
P 		242
C 297
(3)
P 		214.2
(0.7)
P 		120.2
(-1.9)
P 		80.8
(-3)
P 		178.9
(-0.3)
P 		113.2
(-2.1)
P 		216
avr 264.8
(2.9) 		267.7
(3) 		95.1
(-3) 		115.5
(-2.3) 		170.8
(-0.4) 		158.7
(-0.8) 		173
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174786_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22093
Sequence Type Exemplar sequence
Representative Public ID CEK034G7R NCBI
Target Description CEK034G7R_rc /REP_DB=TREMBL Accession /GB=D33698 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk34g7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
T21B6.1.1 ENSEMBL cdna:known chromosome:CEL140:X:10920455:10928907:-1 gene:T21B6.1 11/11 None
T21B6.1.2 ENSEMBL cdna:known chromosome:CEL140:X:10920455:10923442:-1 gene:T21B6.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10920464-10920824(-) 98.61 100.0
Public Domain and Genome References
Ensembl T21B6.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA92012 Hypothetical protein T21B6.1 [Caenorhabditis elegans] ref|NP_509826.1| DystroGlycaN family member (dgn-1) [Caenorhabditis elegans] 0.0
blast CAE70793 Hypothetical protein CBG17551 [Caenorhabditis briggsae] 0.0
blast AAZ42358 dystroglycan [Caenorhabditis remanei] 1.0E-68
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
T21B6.1.1 1 474-496
T21B6.1.2 1 474-496
Sequence
Target Sequence 
>C. ELEGANS:174786_AT
ttttctgtagttattgttgcattttgaatcatttctcagtactttcccaccaacacaatc
ccactcccaaaaatcatccatctcatcccagctttcttcatttttattttttagtttcta
acactcccatttttctctaccacaaaacacatatattcctcaattttgtaacggtgattt
tcttatttcttgtatgctctctgagcctttggaattccatgggttttctcaattcactgt
tttccgcctttttcctcaatagttagttgttctctgtcatttttgattaccccaccacca
accatctctccccagttttaacagtcctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTCTGTAGTTATTGTTGCATTTT 453 677 13 Antisense
GTTGCATTTTGAATCATTTCTCAGT 607 439 28 Antisense
TTTTGAATCATTTCTCAGTACTTTC 130 679 34 Antisense
TTTCTTATTTCTTGTATGCTCTCTG 541 671 191 Antisense
CTTATTTCTTGTATGCTCTCTGAGC 241 223 194 Antisense
TATTTCTTGTATGCTCTCTGAGCCT 163 663 196 Antisense
TTGTATGCTCTCTGAGCCTTTGGAA 651 707 202 Antisense
CAATAGTTAGTTGTTCTCTGTCATT 360 181 269 Antisense
GTTAGTTGTTCTCTGTCATTTTTGA 218 447 274 Antisense
GTTGTTCTCTGTCATTTTTGATTAC 27 439 278 Antisense
CTCTCCCCAGTTTTAACAGTCCTGT 459 231 318 Antisense
Sequence Source Affymetrix Proprietary Database