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[174785_at]

Description CEK099D7R_rc /REP_DB=TREMBL Accession /GB=D66384 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk99d7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 51      6grp_high1_10_10 > 15      4grp_highest_8_8 > 40      4grp_high_8_8 > 43      6grp_highest_nonorm > 30      6grp_total > 16      4grp_total > 53      6grp_highest_sub > De      6grp_cgc > 13      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1229
1 2 3 4 range
A 1715.5
(3)
P 		1516.9
(2)
P 		1050.3
(-0.4)
P 		527.7
(-3)
P 		1188
B 1406.3
(2.9)
P 		1422.6
(3)
P 		1135.7
(0.9)
P 		620.6
(-3)
P 		802
C 1397
(3)
P 		1268
(2.1)
P 		1207.6
(1.8)
P 		486.6
(-3)
P 		910
avr 1506.3
(3) 		1402.5
(2.4) 		1131.2
(0.7) 		545
(-3) 		961

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1276
1 2 3 4 5 6 range
A 1492.4
(3)
P 		1155.2
(1.1)
P 		479.9
(-2.6)
P 		432.5
(-2.9)
P 		558.4
(-2.2)
P 		406.2
(-3)
P 		1086
B 1445.9
(3)
P 		1227.8
(1.8)
P 		386.3
(-3)
P 		426.4
(-2.8)
P 		526.1
(-2.2)
P 		520.4
(-2.2)
P 		1060
C 1461.1
(3)
P 		1160.5
(1.6)
P 		542.5
(-1.4)
P 		257.3
(-2.8)
P 		643.4
(-0.9)
P 		216.5
(-3)
P 		1245
avr 1466.5
(3) 		1181.2
(1.4) 		469.6
(-2.5) 		372.1
(-3) 		576
(-1.9) 		381
(-3) 		1094
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 547
1 2 3 4 range
A 624.6
(3)
P 		329.3
(-0.2)
P 		274.6
(-0.8)
P 		77.2
(-3)
P 		547
B 448.5
(3)
P 		351.4
(1.2)
P 		263.2
(-0.5)
P 		132.3
(-3)
P 		316
C 462.4
(3)
P 		364.5
(1.5)
P 		420.9
(2.3)
P 		82
(-3)
P 		380
avr 511.8
(3) 		348.4
(0.6) 		319.6
(0.2) 		97.2
(-3) 		415

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 490
1 2 3 4 5 6 range
A 275.1
(0.4)
P 		410.8
(3)
P 		104.5
(-2.9)
P 		109.7
(-2.8)
P 		168.5
(-1.7)
P 		98.9
(-3)
P 		312
B 503.1
(3)
P 		408.7
(1.6)
P 		93.8
(-3)
P 		112.9
(-2.7)
P 		213.8
(-1.2)
P 		194
(-1.5)
P 		409
C 541.6
(3)
P 		354.1
(0.7)
P 		138.1
(-1.9)
P 		51.7
(-3)
P 		208.2
(-1.1)
P 		72.5
(-2.7)
P 		490
avr 439.9
(3) 		391.2
(2.2) 		112.1
(-2.6) 		91.4
(-3) 		196.8
(-1.2) 		121.8
(-2.5) 		349
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174785_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20519
Sequence Type Exemplar sequence
Representative Public ID CEK099D7R NCBI
Target Description CEK099D7R_rc /REP_DB=TREMBL Accession /GB=D66384 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk99d7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064646(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064646 NCBI Caenorhabditis elegans UNCoordinated family member (unc-52) (unc-52) mRNA, complete cds. 11/11 None
ZC101.2b ENSEMBL cdna:known chromosome:CEL140:II:14661162:14666834:-1 gene:ZC101.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175126 5 1 NM_001027317 172932_x_at (11)
NM_064643 172932_x_at (10), 194141_at (11)
NM_064644 172932_x_at (11)
NM_064645 172932_x_at (11)
NM_064646 174785_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:14661187-14661517(-) 98.8 98.8
Public Domain and Genome References
Ensembl ZC101.2
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07704 Hypothetical protein ZC101.2b [Caenorhabditis elegans] ref|NP_497047.1| UNCoordinated family member (unc-52) [Caenorhabditis elegans] pir||F88369 protein unc-52 [imported] - Caenorhabditis elegans 0.0
blast CAH04744 Hypothetical protein ZC101.2f [Caenorhabditis elegans] emb|CAH04704.1| Hypothetical protein ZC101.2f [Caenorhabditis elegans] ref|NP_001022488.1| UNCoordinated family member (unc-52) [Caenorhabditis elegans] 0.0
blast CAB07706 Hypothetical protein ZC101.2a [Caenorhabditis elegans] emb|CAB07567.1| Hypothetical protein ZC101.2a [Caenorhabditis elegans] ref|NP_497046.1| UNCoordinated family member (unc-52) [Caenorhabditis elegans] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 7.8E-18
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 3.1E-20
Pfam IPR002172 EMBL-EBI Low density lipoprotein-receptor, class A 8.1E-20
Pfam IPR000034 EMBL-EBI Laminin B 9.3E-79
Pfam IPR000034 EMBL-EBI Laminin B 5.3E-73
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 2.7E-9
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 1.5E-5
Pfam IPR002049 EMBL-EBI Laminin-type EGF-like domain 7.8E-20
Sequence
Target Sequence 
>C. ELEGANS:174785_AT
aaagcccttaatgatcgtggaaacagaaactagtaaataatcatgtgtttgcgtgtgtct
caatgtttccgttccgtgcttgtttgtttgtatcatgtctaaaagtgattcaaaagttta
tatctttaaaagaaaatttatagaaaaaaaaacaattaaatttccacactatttttcccg
caatcacttgatccgttttgcttctttatcatttgttattgtttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGCCCTTAATGATCGTGGAAACA 95 121 13 Antisense
GATCGTGGAAACAGAAACTAGTAAA 587 379 25 Antisense
GTAAATAATCATGTGTTTGCGTGTG 58 461 45 Antisense
TTTGCGTGTGTCTCAATGTTTCCGT 193 669 60 Antisense
GTTCCGTGCTTGTTTGTTTGTATCA 450 441 83 Antisense
GTGCTTGTTTGTTTGTATCATGTCT 46 481 88 Antisense
GTTTGTTTGTATCATGTCTAAAAGT 494 451 94 Antisense
TATTTTTCCCGCAATCACTTGATCC 22 663 182 Antisense
CAATCACTTGATCCGTTTTGCTTCT 674 179 193 Antisense
CTTGATCCGTTTTGCTTCTTTATCA 52 219 199 Antisense
TCTTTATCATTTGTTATTGTTTCAA 692 615 215 Antisense
Sequence Source Affymetrix Proprietary Database