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[174783_s_at]

Description CEK033D4R_rc /REP_DB=TREMBL Accession /GB=D33600 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33d4 : 3prime end, single read.
Cluster 6grp_total > 87      4grp_total > 26      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 18.5
(-1.7)
A 		5.2
(-3)
A 		7
(-2.8)
A 		65.6
(3)
A 		60
B 2.1
(-3)
A 		50.7
(3)
A 		28.3
(0.2)
A 		29.8
(0.4)
A 		49
C 4.7
(-3)
A 		11.8
(2.1)
A 		5.3
(-2.6)
A 		13
(3)
A 		8
avr 8.4
(-3) 		22.6
(0.1) 		13.5
(-1.9) 		36.1
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 24.3
(-1.6)
A 		5
(-3)
A 		5.5
(-3)
A 		35.9
(-0.8)
A 		39.9
(-0.5)
A 		87.4
(3)
A 		82
B 5.8
(-3)
A 		5.8
(-3)
A 		5.5
(-3)
A 		11.2
(-2.5)
A 		45.6
(0.2)
A 		81.3
(3)
M 		76
C 5.2
(-3)
A 		6.2
(-2.9)
A 		10.5
(-2.6)
A 		10.3
(-2.6)
A 		53
(0.3)
A 		91.4
(3)
P 		86
avr 11.8
(-2.5) 		5.7
(-3) 		7.2
(-2.9) 		19.1
(-2) 		46.2
(0) 		86.7
(3) 		81
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 6.7
(1)
A 		1.1
(-3)
A 		1.8
(-2.5)
A 		9.6
(3)
A 		9
B 0.7
(-3)
A 		12.5
(3)
A 		6.5
(-0.1)
A 		6.3
(-0.2)
A 		12
C 1.6
(-3)
A 		3.4
(3)
A 		1.9
(-2)
A 		2.2
(-1)
A 		2
avr 3
(-3) 		5.7
(2.4) 		3.4
(-2.2) 		6
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 4.5
(-2)
A 		1.8
(-2.8)
A 		1.2
(-3)
A 		9.1
(-0.6)
A 		12.1
(0.3)
A 		21.3
(3)
A 		20
B 2
(-2.9)
A 		1.9
(-2.9)
A 		1.3
(-3)
A 		3
(-2.6)
A 		18.5
(0.6)
A 		30.3
(3)
M 		29
C 1.9
(-3)
A 		1.9
(-3)
A 		2.7
(-2.8)
A 		2.1
(-3)
A 		17.2
(0.2)
A 		30.6
(3)
P 		29
avr 2.8
(-2.7) 		1.9
(-3) 		1.7
(-3) 		4.7
(-2.3) 		15.9
(0.3) 		27.4
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174783_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21650
Sequence Type Exemplar sequence
Representative Public ID CEK033D4R NCBI
Target Description CEK033D4R_rc /REP_DB=TREMBL Accession /GB=D33600 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk33d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067810 NCBI Caenorhabditis elegans Y69A2AR.19 (Y69A2AR.19) mRNA, complete cds. 11/11 None
SNAP00000018802 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2489039:2494061:1 11/11 None
GENEFINDER00000018855 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2488848:2494061:1 11/11 None
Y69A2AR.19 ENSEMBL cdna:known chromosome:CEL140:IV:2488848:2494133:1 gene:Y69A2AR.19 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2493664-2494129(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y69A2AR.19
Entrez Gene 177036 Entrez gene
SwissProt Q95XJ2 EMBL-EBI
WormBase CE29903 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6470 protein amino acid dephosphorylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4725 protein tyrosine phosphatase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68563 Hypothetical protein Y69A2AR.19 [Caenorhabditis elegans] ref|NP_500211.2| Y69A2AR.19 [Caenorhabditis elegans] 0.0
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 1.0E-120
blast CAB60442 Hypothetical protein Y80D3A.8 [Caenorhabditis elegans] ref|NP_507691.1| Y80D3A.8 [Caenorhabditis elegans] 1.0E-117
blast CAA22059 Hypothetical protein Y113G7C.1 [Caenorhabditis elegans] ref|NP_507918.1| Y113G7C.1 [Caenorhabditis elegans] 1.0E-95
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 1.5E-18
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-62
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 9.1E-19
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-62
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 9.1E-19
Pfam IPR000242 EMBL-EBI Tyrosine specific protein phosphatase 1.9E-62
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500211.2 1 852-874
Y69A2AR.19 1 852-874
SNAP00000018802 1 1012-1034
GENEFINDER00000018855 1 934-956
Sequence
Target Sequence 
>C. ELEGANS:174783_S_AT
tgaatcaggctgtcgccgaacttcgtgatcagcgctggtgtgccattcagaccgtcgagc
agatgtactgggttcaagttggatctgtctacagactctccaaggaaaagaacattgaca
tgaagcactacaaggaacagtttgaaatgctggatggtggtcacaaattcttgtatttgg
ctcaggagcagtttaaagatggaagaaaggatgttctgaagaaacttgaagctgatggtg
aggttagaaaggccaagcaggatgagaagaaagcaacgactggaattgatgaagatcttg
gtggtgatcgtaaga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGAATCAGGCTGTCGCCGAACTTCG 590 575 16 Antisense
GCTGTCGCCGAACTTCGTGATCAGC 583 295 24 Antisense
AACTTCGTGATCAGCGCTGGTGTGC 148 139 34 Antisense
TGCCATTCAGACCGTCGAGCAGATG 649 585 56 Antisense
GTCGAGCAGATGTACTGGGTTCAAG 624 473 69 Antisense
GGGTTCAAGTTGGATCTGTCTACAG 271 497 85 Antisense
GATCTGTCTACAGACTCTCCAAGGA 180 419 97 Antisense
TGAAATGCTGGATGGTGGTCACAAA 88 571 158 Antisense
AATTCTTGTATTTGGCTCAGGAGCA 260 175 181 Antisense
GGTGAGGTTAGAAAGGCCAAGCAGG 617 497 252 Antisense
GAAGATCTTGGTGGTGATCGTAAGA 672 337 306 Antisense
Sequence Source Affymetrix Proprietary Database