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[174782_s_at]

Description CEC1023_rc /REP_DB=TREMBL Accession /GB=C11102 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk164a12 : 3prime end, single read.
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 20      4grp_high_8_8 > 31      6grp_total > 97      4grp_total > 32      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 132.3
(-3)
P 		238.6
(-0.4)
P 		379.4
(3)
P 		293.8
(0.9)
P 		247
B 129.2
(-3)
P 		248.8
(-0.6)
P 		348.7
(1.4)
P 		428.4
(3)
P 		299
C 179.8
(-3)
P 		247.5
(-1.4)
P 		438.6
(3)
P 		345.6
(0.8)
P 		259
avr 147.1
(-3) 		245
(-0.6) 		388.9
(3) 		355.9
(2.2) 		242

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1714
1 2 3 4 5 6 range
A 136.2
(-3)
A 		136.2
(-3)
P 		288.3
(-2.3)
P 		503
(-1.3)
P 		1071.7
(1.3)
P 		1449.5
(3)
P 		1313
B 140.7
(-3)
P 		150.4
(-3)
P 		303.4
(-2.4)
P 		449.8
(-1.8)
P 		1017.9
(0.4)
P 		1679.2
(3)
P 		1539
C 90.7
(-3)
P 		137.8
(-2.8)
P 		186.1
(-2.7)
P 		466
(-1.7)
P 		994.6
(0.2)
P 		1804.9
(3)
P 		1714
avr 122.5
(-3) 		141.5
(-2.9) 		259.3
(-2.5) 		472.9
(-1.6) 		1028.1
(0.6) 		1644.5
(3) 		1522
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 48.2
(-2.4)
P 		51.8
(-2.1)
P 		99.2
(3)
P 		43
(-3)
P 		56
B 41.2
(-3)
P 		61.4
(-0.6)
P 		80.8
(1.7)
P 		91.3
(3)
P 		50
C 59.5
(-2.9)
P 		71.2
(-2.2)
P 		152.9
(3)
P 		58.3
(-3)
P 		95
avr 49.6
(-3) 		61.5
(-1.8) 		111
(3) 		64.2
(-1.6) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 601
1 2 3 4 5 6 range
A 25.1
(-3)
A 		48.5
(-2.6)
P 		62.8
(-2.3)
P 		127.6
(-1.1)
P 		323.4
(2.5)
P 		352.9
(3)
P 		328
B 49
(-3)
P 		50.1
(-3)
P 		73.7
(-2.7)
P 		119.1
(-2.3)
P 		413.5
(0.8)
P 		626.2
(3)
P 		577
C 33.6
(-3)
P 		42
(-2.9)
P 		47.4
(-2.9)
P 		93.7
(-2.4)
P 		321.8
(0)
P 		604.2
(3)
P 		571
avr 35.9
(-3) 		46.9
(-2.9) 		61.3
(-2.7) 		113.5
(-2.1) 		352.9
(0.9) 		527.8
(3) 		492
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174782_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20374
Sequence Type Exemplar sequence
Representative Public ID CEC1023 NCBI
Target Description CEC1023_rc /REP_DB=TREMBL Accession /GB=C11102 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk164a12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059153(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059153 NCBI Caenorhabditis elegans B0261.7 (B0261.7) mRNA, complete cds. 11/11 A 
GENEFINDER00000040724 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5269407:5270937:-1 11/11 None
SNAP00000040718 ENSEMBL cdna:SNAP chromosome:CEL140:I:5269703:5270937:-1 11/11 None
B0261.7 ENSEMBL cdna:known chromosome:CEL140:I:5269556:5270937:-1 gene:B0261.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5269565-5270016(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl B0261.7
Entrez Gene 172169 Entrez gene
SwissProt O01442 EMBL-EBI
WormBase CE07709 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52353 Hypothetical protein B0261.7 [Caenorhabditis elegans] ref|NP_491554.1| B0261.7 [Caenorhabditis elegans] 1.0E-180
blast AAB52353 Hypothetical protein B0261.7 [Caenorhabditis elegans] ref|NP_491554.1| B0261.7 [Caenorhabditis elegans] 1.0E-178
blast CAE67378 Hypothetical protein CBG12856 [Caenorhabditis briggsae] 6.0E-59
blast CAE67378 Hypothetical protein CBG12856 [Caenorhabditis briggsae] 7.0E-59
blast CAB02276 Hypothetical protein C36B1.11 [Caenorhabditis elegans] ref|NP_492369.1| C36B1.11 [Caenorhabditis elegans] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:174782_S_AT
aaagtcgattccacttcgatttcgattattacaactgttaaagtggagaaccttcaaaac
gattctgcaataaacatgctctgtcgtagtttgagtctccgtttcgatcaaattcgagac
gaattgacaattgagcaggctttgcaagcagtctctgacatgcttcatgaatctgttgga
agcctcgaggagaaaatggctgctgctagtcgcttcaaagagcgacacaatgttgcactc
tactac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGTCGATTCCACTTCGATTTCGA 346 121 20 Antisense
TCGATTTCGATTATTACAACTGTTA 473 603 35 Antisense
GATTCTGCAATAAACATGCTCTGTC 666 431 80 Antisense
GCTCTGTCGTAGTTTGAGTCTCCGT 626 293 97 Antisense
TGAGTCTCCGTTTCGATCAAATTCG 264 565 111 Antisense
GAGCAGGCTTTGCAAGCAGTCTCTG 102 389 152 Antisense
GCAGTCTCTGACATGCTTCATGAAT 683 311 167 Antisense
ATGAATCTGTTGGAAGCCTCGAGGA 574 43 186 Antisense
AGAAAATGGCTGCTGCTAGTCGCTT 401 73 210 Antisense
GCTGCTGCTAGTCGCTTCAAAGAGC 606 297 218 Antisense
GCGACACAATGTTGCACTCTACTAC 555 289 241 Antisense
Sequence Source Affymetrix Proprietary Database