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[174781_at]

Description CEK040C1R_rc /REP_DB=TREMBL Accession /GB=D34058 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40c1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      6grp_highest_nonorm > 53      6grp_total > 82      4grp_total > 49      6grp_high1_sub > 02_03_04_05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1539
1 2 3 4 range
A 271.5
(-3)
A 		1436.2
(2.7)
P 		1495.1
(3)
P 		309.5
(-2.8)
A 		1224
B 203.9
(-3)
A 		1674
(3)
P 		1472
(2.2)
P 		377.7
(-2.3)
P 		1470
C 223.3
(-3)
A 		1743.1
(3)
P 		1523.2
(2.1)
P 		287.8
(-2.7)
A 		1520
avr 232.9
(-3) 		1617.8
(3) 		1496.8
(2.5) 		325
(-2.6) 		1385

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 771
1 2 3 4 5 6 range
A 848.9
(0.5)
P 		856.6
(0.6)
P 		690.8
(-1.2)
P 		870
(0.8)
P 		1077.9
(3)
P 		522
(-3)
P 		556
B 707.1
(-1.5)
P 		963.6
(0.5)
P 		863
(-0.3)
P 		1289.8
(3)
P 		872.1
(-0.3)
P 		519.2
(-3)
P 		771
C 715.2
(-1.7)
P 		1226.4
(3)
P 		749.5
(-1.4)
P 		1013.5
(1)
P 		924.1
(0.2)
P 		575.1
(-3)
P 		651
avr 757.1
(-0.5) 		1015.5
(2.5) 		767.8
(-0.4) 		1057.8
(3) 		958
(1.8) 		538.8
(-3) 		519
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 486
1 2 3 4 range
A 98.9
(-2.1)
A 		311.8
(1.6)
P 		390.8
(3)
P 		45.3
(-3)
A 		346
B 65
(-3)
A 		413.4
(3)
P 		341.1
(1.8)
P 		80.5
(-2.7)
P 		348
C 73.9
(-2.7)
A 		501.1
(2.6)
P 		530.9
(3)
P 		48.5
(-3)
A 		482
avr 79.3
(-2.6) 		408.8
(2.8) 		420.9
(3) 		58.1
(-3) 		363

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 247
1 2 3 4 5 6 range
A 156.5
(-2.1)
P 		304.6
(2.4)
P 		150.4
(-2.3)
P 		220.6
(-0.2)
P 		325.3
(3)
P 		127.1
(-3)
P 		198
B 246
(-1)
P 		320.7
(1.7)
P 		209.6
(-2.4)
P 		341.6
(2.5)
P 		354.3
(3)
P 		193.6
(-3)
P 		161
C 265.1
(-0.6)
P 		374.2
(3)
P 		190.8
(-3)
P 		203.8
(-2.6)
P 		299
(0.5)
P 		192.5
(-2.9)
P 		183
avr 222.5
(-1.1) 		333.2
(3) 		183.6
(-2.5) 		255.3
(0.1) 		326.2
(2.7) 		171.1
(-3) 		162
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174781_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22460
Sequence Type Exemplar sequence
Representative Public ID CEK040C1R NCBI
Target Description CEK040C1R_rc /REP_DB=TREMBL Accession /GB=D34058 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40c1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076216(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076216 NCBI Caenorhabditis elegans T27A10.6 (T27A10.6) mRNA, complete cds. 11/11 A 
GENEFINDER00000016189 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:3589029:3596338:-1 9/11 None
T27A10.6.2 ENSEMBL cdna:known chromosome:CEL140:X:3588855:3596340:-1 gene:T27A10.6 11/11 None
T27A10.6.1 ENSEMBL cdna:known chromosome:CEL140:X:3588855:3596447:-1 gene:T27A10.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:3588865-3589192(-) 91.44 100.0
Public Domain and Genome References
Gene Title
Ensembl T27A10.6
Entrez Gene 180649 Entrez gene
SwissProt Q22822 EMBL-EBI
WormBase CE30193 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB52504 Hypothetical protein T27A10.6 [Caenorhabditis elegans] ref|NP_508617.2| T27A10.6 [Caenorhabditis elegans] 0.0
blast CAE68449 Hypothetical protein CBG14239 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174781_AT
gaatccgccatcagagatcaatctaatatggtgattgcatgtggactcgatcaagacatt
tggacaccaagtcgctgtccagaaaatgcggattgtttcccatcacacgacagtctttac
agaatttgctgtcctgttcaccgagttggataagaaacatttcacgcaaattaataataa
taataaatttaataagcttaacttccttcatctctcaagtccccctgtaataatact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATCCGCCATCAGAGATCAATCTA 312 329 23 Antisense
GATTGCATGTGGACTCGATCAAGAC 219 433 55 Antisense
GACTCGATCAAGACATTTGGACACC 573 373 66 Antisense
GACATTTGGACACCAAGTCGCTGTC 354 365 77 Antisense
CACCAAGTCGCTGTCCAGAAAATGC 506 201 87 Antisense
AAATGCGGATTGTTTCCCATCACAC 539 119 106 Antisense
TTCCCATCACACGACAGTCTTTACA 543 697 119 Antisense
ACAGAATTTGCTGTCCTGTTCACCG 392 109 141 Antisense
CTGTCCTGTTCACCGAGTTGGATAA 677 239 151 Antisense
AATAAGCTTAACTTCCTTCATCTCT 679 171 213 Antisense
TCTCAAGTCCCCCTGTAATAATACT 428 613 235 Antisense
Sequence Source Affymetrix Proprietary Database