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[174780_at]

Description CEK017A1R_rc /REP_DB=TREMBL Accession /GB=D32448 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17a1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 35      4grp_high_8_8 > 56      6grp_highest_nonorm > 40      6grp_total > 17      4grp_total > 63      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 367
1 2 3 4 range
A 809.1
(3)
P 		441.7
(-3)
P 		807.2
(3)
P 		533.4
(-1.5)
P 		367
B 623.4
(3)
P 		591.9
(-0)
P 		605.3
(1.3)
P 		560.5
(-3)
P 		63
C 708.8
(3)
P 		632.7
(-1.1)
P 		596.4
(-3)
P 		656.9
(0.2)
P 		112
avr 713.8
(3) 		555.4
(-3) 		669.6
(1.3) 		583.6
(-1.9) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 446
1 2 3 4 5 6 range
A 870.2
(3)
P 		604.2
(-1.8)
P 		537.7
(-3)
P 		575.1
(-2.3)
P 		704.7
(0)
P 		618.2
(-1.5)
P 		333
B 795.5
(3)
P 		618
(-1)
P 		573.8
(-2)
P 		687.4
(0.6)
P 		528.7
(-3)
P 		563.8
(-2.2)
P 		267
C 647.6
(0.7)
P 		783
(3)
P 		624.9
(0.4)
P 		577.5
(-0.4)
P 		424
(-3)
P 		614.8
(0.2)
P 		359
avr 771.1
(3) 		668.4
(0.2) 		578.8
(-2.3) 		613.3
(-1.3) 		552.5
(-3) 		598.9
(-1.7) 		219
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 294.6
(3)
P 		95.9
(-2.5)
P 		211
(0.7)
P 		78.1
(-3)
P 		217
B 198.8
(3)
P 		146.2
(-1)
P 		140.3
(-1.4)
P 		119.5
(-3)
P 		79
C 234.6
(3)
P 		181.9
(0.4)
P 		207.9
(1.7)
P 		110.8
(-3)
P 		124
avr 242.7
(3) 		141.3
(-1.3) 		186.4
(0.6) 		102.8
(-3) 		140

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 161
1 2 3 4 5 6 range
A 160.4
(-0.3)
P 		214.9
(3)
P 		117.1
(-3)
P 		145.9
(-1.2)
P 		212.7
(2.9)
P 		150.5
(-1)
P 		98
B 276.8
(3)
P 		205.7
(-0.1)
P 		139.3
(-3)
P 		182.1
(-1.1)
P 		214.8
(0.3)
P 		210.2
(0.1)
P 		138
C 240
(3)
P 		238.9
(2.9)
P 		159.1
(-0.9)
P 		116.1
(-3)
P 		137.2
(-2)
P 		205.8
(1.3)
P 		124
avr 225.7
(3) 		219.8
(2.6) 		138.5
(-3) 		148
(-2.3) 		188.2
(0.4) 		188.8
(0.5) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174780_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20520
Sequence Type Exemplar sequence
Representative Public ID CEK017A1R NCBI
Target Description CEK017A1R_rc /REP_DB=TREMBL Accession /GB=D32448 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17a1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001027199(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001027199 NCBI Caenorhabditis elegans T26C5.3c (T26C5.3) mRNA, complete cds. 11/11 None
T26C5.3c ENSEMBL cdna:known chromosome:CEL140:II:9236494:9249021:1 gene:T26C5.3 11/11 A 
T26C5.3a ENSEMBL cdna:known chromosome:CEL140:II:9242215:9249263:1 gene:T26C5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
259455 3 1 NM_001027199 174780_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9248606-9249005(+) 100.0 100.0
Public Domain and Genome References
Ensembl T26C5.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAH04735 Hypothetical protein T26C5.3c [Caenorhabditis elegans] ref|NP_001022370.1| T26C5.3c [Caenorhabditis elegans] 0.0
blast CAA90730 Hypothetical protein T26C5.3b [Caenorhabditis elegans] ref|NP_495970.1| T26C5.3b [Caenorhabditis elegans] 0.0
blast CAA90728 Hypothetical protein T26C5.3a [Caenorhabditis elegans] ref|NP_495969.1| T26C5.3a [Caenorhabditis elegans] 0.0
blast CAE57894 Hypothetical protein CBG00943 [Caenorhabditis briggsae] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001022370.1 12 74-96,111-130,143-160,175-197,210-232,258-280,326-348,363-385,392-414,429-451,472-494,528-550
T26C5.3c 12 74-96,111-130,143-160,175-197,210-232,258-280,326-348,363-385,392-414,429-451,472-494,528-550
T26C5.3a 12 132-154,169-188,201-218,233-255,268-290,316-338,384-406,421-443,450-472,487-509,530-552,586-608
Sequence
Target Sequence 
>C. ELEGANS:174780_AT
taatcctttatttttttgcatgcacaacaaacaaatagtagaataataataatgtttccg
ggcgtttttttagcgtttaatgtatttttatctcctgtcatttttttgtataactatgat
tctcagttttagtgaatcgcatggcttggtctgactcctctctctctcctccacagcttt
cccctggtcctcacagtttttcttttggcattcataatttttaaaagatcctgtgttctc
tcttcctctcccctctttctctgtgataataattatgccaaggtttgtgatgatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAATCCTTTATTTTTTTGCATGCAC 149 637 50 Antisense
ATGTATTTTTATCTCCTGTCATTTT 596 47 129 Antisense
TTTTTATCTCCTGTCATTTTTTTGT 409 675 134 Antisense
GTATAACTATGATTCTCAGTTTTAG 702 445 157 Antisense
CAGTTTTAGTGAATCGCATGGCTTG 427 207 173 Antisense
TGAATCGCATGGCTTGGTCTGACTC 117 575 182 Antisense
GTCCTCACAGTTTTTCTTTTGGCAT 133 477 236 Antisense
CAGTTTTTCTTTTGGCATTCATAAT 415 207 243 Antisense
TAAAAGATCCTGTGTTCTCTCTTCC 74 641 271 Antisense
TCCCCTCTTTCTCTGTGATAATAAT 245 597 298 Antisense
AATTATGCCAAGGTTTGTGATGATT 63 177 320 Antisense
Sequence Source Affymetrix Proprietary Database