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[174779_s_at]

Description CEK003CZR_rc /REP_DB=TREMBL Accession /GB=D27742 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3c12 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 16      4grp_highest_8_8 > 62      4grp_high_8_8 > 18      6grp_highest_nonorm > 30      6grp_total > 16      4grp_total > 29      6grp_highest_sub > De      6grp_cgc > 23      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 771
1 2 3 4 range
A 1201.3
(3)
P 		921.8
(0.6)
P 		497
(-3)
P 		963.8
(1)
P 		704
B 1048.5
(2.3)
P 		746.5
(-0.3)
P 		430.6
(-3)
P 		1136.3
(3)
P 		706
C 1177.1
(3)
P 		833.1
(-0.3)
P 		552.2
(-3)
P 		903.7
(0.4)
P 		625
avr 1142.3
(3) 		833.8
(0.1) 		493.3
(-3) 		1001.3
(1.7) 		649

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1345
1 2 3 4 5 6 range
A 1759.5
(3)
P 		1103.8
(-0.1)
P 		626.8
(-2.4)
P 		505.3
(-3)
P 		508.3
(-3)
P 		639
(-2.4)
P 		1254
B 1600.4
(3)
P 		1027.2
(0)
P 		911.8
(-0.5)
P 		563.2
(-2.3)
P 		435.9
(-3)
P 		530.3
(-2.5)
P 		1165
C 1209.8
(3)
P 		1176.3
(2.7)
P 		760.5
(-0.4)
P 		532.1
(-2.1)
P 		414.4
(-3)
P 		693.3
(-0.9)
P 		795
avr 1523.2
(3) 		1102.4
(0.6) 		766.4
(-1.2) 		533.5
(-2.5) 		452.9
(-3) 		620.9
(-2.1) 		1070
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 338
1 2 3 4 range
A 437.4
(3)
P 		200.1
(-1.6)
P 		129.9
(-3)
P 		141.1
(-2.8)
P 		308
B 334.4
(3)
P 		184.4
(-0.8)
P 		99.8
(-3)
P 		242.1
(0.6)
P 		235
C 389.7
(3)
P 		239.5
(-0.8)
P 		192.4
(-2)
P 		152.4
(-3)
P 		237
avr 387.2
(3) 		208
(-1.4) 		140.7
(-3) 		178.5
(-2.1) 		247

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 450
1 2 3 4 5 6 range
A 324.4
(1.5)
P 		392.6
(3)
P 		136.5
(-2.8)
P 		128.2
(-3)
P 		153.4
(-2.4)
P 		155.6
(-2.4)
P 		264
B 556.9
(3)
P 		341.9
(-0.2)
P 		221.4
(-1.9)
P 		149.2
(-3)
P 		177.1
(-2.6)
P 		197.7
(-2.3)
P 		408
C 448.4
(3)
P 		358.9
(1.4)
P 		193.6
(-1.5)
P 		107
(-3)
P 		134.1
(-2.5)
P 		232.1
(-0.8)
P 		341
avr 443.2
(3) 		364.5
(1.5) 		183.8
(-1.9) 		128.1
(-3) 		154.9
(-2.5) 		195.1
(-1.7) 		315
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174779_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22186
Sequence Type Exemplar sequence
Representative Public ID CEK003CZR NCBI
Target Description CEK003CZR_rc /REP_DB=TREMBL Accession /GB=D27742 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk3c12 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
ZK867.1c ENSEMBL cdna:known chromosome:CEL140:X:7218057:7226765:1 gene:ZK867.1 11/11 None
ZK867.1b ENSEMBL cdna:known chromosome:CEL140:X:7218275:7226765:1 gene:ZK867.1 11/11 None
ZK867.1d ENSEMBL cdna:known chromosome:CEL140:X:7218416:7226765:1 gene:ZK867.1 11/11 None
ZK867.1a ENSEMBL cdna:known chromosome:CEL140:X:7220659:7226765:1 gene:ZK867.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:7226383-7226737(+) 100.0 100.0
Public Domain and Genome References
Ensembl ZK867.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68627 Hypothetical protein ZK867.1c [Caenorhabditis elegans] ref|NP_509214.2| ZK867.1c [Caenorhabditis elegans] 0.0
blast T28067 hypothetical protein ZK867.1 - Caenorhabditis elegans 0.0
blast AAL11489 Hypothetical protein ZK867.1d [Caenorhabditis elegans] ref|NP_509213.1| ZK867.1d [Caenorhabditis elegans] 0.0
blast AAL11488 Hypothetical protein ZK867.1a [Caenorhabditis elegans] ref|NP_509215.1| ZK867.1a [Caenorhabditis elegans] 1.0E-174
blast AAL11489 Hypothetical protein ZK867.1d [Caenorhabditis elegans] ref|NP_509213.1| ZK867.1d [Caenorhabditis elegans] 1.0E-168
blast AAK68627 Hypothetical protein ZK867.1c [Caenorhabditis elegans] ref|NP_509214.2| ZK867.1c [Caenorhabditis elegans] 1.0E-166
blast AAL11488 Hypothetical protein ZK867.1a [Caenorhabditis elegans] ref|NP_509215.1| ZK867.1a [Caenorhabditis elegans] 2.0E-74
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 6.9E-6
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 1.1E-5
Sequence
Target Sequence 
>C. ELEGANS:174779_S_AT
gcaccctcatctttctataaatctatatccactaacatcccagtactcgaatctagcttt
taaatcaaacccctcccaaccattacggataattgttttcagcagcatttgttgttgatt
tggaaatgtttcacttgatgataacctcatgagctactgtacttaatatgatttcgccag
tttcactgttctaagttccaaactaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCACCCTCATCTTTCTATAAATCTA 393 315 30 Antisense
TAAATCTATATCCACTAACATCCCA 564 641 47 Antisense
TAACATCCCAGTACTCGAATCTAGC 639 639 62 Antisense
ACGGATAATTGTTTTCAGCAGCATT 408 95 114 Antisense
GTTTTCAGCAGCATTTGTTGTTGAT 346 449 124 Antisense
ATGTTTCACTTGATGATAACCTCAT 523 47 155 Antisense
TAACCTCATGAGCTACTGTACTTAA 42 637 171 Antisense
GAGCTACTGTACTTAATATGATTTC 40 389 180 Antisense
AATATGATTTCGCCAGTTTCACTGT 516 173 194 Antisense
GCCAGTTTCACTGTTCTAAGTTCCA 434 273 205 Antisense
TTCACTGTTCTAAGTTCCAAACTAA 448 685 211 Antisense
Sequence Source Affymetrix Proprietary Database