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[174778_s_at]

Description CEK047A7R_rc /REP_DB=TREMBL Accession /GB=D64185 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk47a7 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 63      6grp_high1_10_10 > 36      6grp_highest_nonorm > 90      6grp_total > 36      4grp_total > 30      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 114.3
(3)
P 		109.1
(1.1)
M 		99.7
(-2.2)
P 		97.5
(-3)
A 		17
B 130.2
(3)
P 		84.5
(-2.2)
A 		77.8
(-3)
M 		127.1
(2.6)
A 		52
C 153.6
(3)
P 		94.7
(-1.8)
A 		80.4
(-3)
P 		109
(-0.7)
P 		73
avr 132.7
(3) 		96.1
(-1.7) 		86
(-3) 		111.2
(0.2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 161.7
(3)
P 		145.7
(1.4)
P 		103.2
(-3)
P 		147.9
(1.6)
P 		115.2
(-1.8)
P 		121.5
(-1.1)
P 		59
B 168.9
(1)
P 		196.3
(3)
P 		152.5
(-0.1)
P 		145.8
(-0.6)
P 		112.7
(-3)
P 		154.8
(0)
P 		84
C 161.1
(1.5)
P 		138.8
(-0.1)
P 		134.4
(-0.4)
P 		98.6
(-3)
P 		106.6
(-2.4)
P 		182.3
(3)
P 		84
avr 163.9
(3) 		160.3
(2.6) 		130
(-0.9) 		130.8
(-0.8) 		111.5
(-3) 		152.9
(1.7) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 41.6
(3)
P 		23.7
(-0.9)
M 		26.1
(-0.4)
P 		14.3
(-3)
A 		27
B 41.5
(3)
P 		20.9
(-2.3)
A 		18
(-3)
M 		27.1
(-0.7)
A 		24
C 50.8
(3)
P 		27.2
(-1.4)
A 		28
(-1.2)
P 		18.4
(-3)
P 		32
avr 44.6
(3) 		23.9
(-2) 		24
(-2) 		19.9
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 46
1 2 3 4 5 6 range
A 29.8
(-1.5)
P 		51.8
(3)
P 		22.5
(-3)
P 		37.5
(0.1)
P 		34.8
(-0.5)
P 		29.6
(-1.5)
P 		29
B 58.8
(1.6)
P 		65.3
(3)
P 		37
(-3)
P 		38.6
(-2.7)
P 		45.8
(-1.1)
P 		57.7
(1.4)
P 		28
C 59.7
(2.8)
P 		42.4
(0.3)
P 		34.2
(-0.9)
P 		19.8
(-3)
P 		34.5
(-0.9)
P 		61
(3)
P 		41
avr 49.4
(2) 		53.2
(3) 		31.2
(-3) 		32
(-2.8) 		38.4
(-1) 		49.4
(2) 		22
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 174778_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20151
Sequence Type Exemplar sequence
Representative Public ID CEK047A7R NCBI
Target Description CEK047A7R_rc /REP_DB=TREMBL Accession /GB=D64185 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk47a7 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061039(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061039 NCBI Caenorhabditis elegans Y71A12B.12 (Y71A12B.12) mRNA, complete cds. 11/11 None
GENEFINDER00000000610 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14013826:14025305:1 11/11 None
SNAP00000000599 ENSEMBL cdna:SNAP chromosome:CEL140:I:14013903:14016544:1 11/11 None
Y71A12B.12.1 ENSEMBL cdna:known chromosome:CEL140:I:14012577:14016589:1 gene:Y71A12B.12 11/11 A 
Y71A12B.12.2 ENSEMBL cdna:known chromosome:CEL140:I:14012607:14016589:1 gene:Y71A12B.12 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14016167-14016498(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y71A12B.12
Entrez Gene 173263 Entrez gene
SwissProt Q9NEM8 EMBL-EBI
WormBase CE36899 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB82004 Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] emb|CAH10808.1| Hypothetical protein Y71A12B.12 [Caenorhabditis elegans] ref|NP_493440.2| Y71A12B.12 [Caenorhabditis elegans] 0.0
blast T27518 hypothetical protein ZC334.5 - Caenorhabditis elegans 0.0
blast CAB16314 Hypothetical protein F47G4.2 [Caenorhabditis elegans] ref|NP_493455.1| F47G4.2 [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174778_S_AT
tgcgccgacgaacttctcaagaaacaattcccatacctcctggccaccaagatatcggtt
gatgttgatatctacttcaccaatggaattgttcagaacatcctccaagtttccgacgac
gttggattgacgctttgggcactgctgaccatcaagatctttgcgcagaaaagtcctcag
agcagtcaaacaatcagaaattccaacttttttcatttcatccaaaaaccacgtattcta
tctgaagcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCGCCGACGAACTTCTCAAGAAAC 313 583 27 Antisense
CAAGAAACAATTCCCATACCTCCTG 646 183 44 Antisense
CCTCCTGGCCACCAAGATATCGGTT 445 267 62 Antisense
GATGTTGATATCTACTTCACCAATG 116 411 87 Antisense
TCAGAACATCCTCCAAGTTTCCGAC 670 621 119 Antisense
GACGTTGGATTGACGCTTTGGGCAC 371 377 144 Antisense
CTTTGGGCACTGCTGACCATCAAGA 286 223 159 Antisense
CTGACCATCAAGATCTTTGCGCAGA 591 237 171 Antisense
GCGCAGAAAAGTCCTCAGAGCAGTC 521 287 189 Antisense
ATTCCAACTTTTTTCATTTCATCCA 178 7 226 Antisense
AAACCACGTATTCTATCTGAAGCGG 540 125 252 Antisense
Sequence Source Affymetrix Proprietary Database