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[174777_at]

Description CEK071A3R_rc /REP_DB=TREMBL Accession /GB=D65923 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71a3 : 3prime end, single read.
Cluster 6grp_total > 42      4grp_total > 53      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 93.6
(3)
A 		69.4
(1.1)
A 		42.5
(-1.1)
A 		19.1
(-3)
A 		75
B 69
(2.7)
A 		43.7
(-2)
A 		38.3
(-3)
A 		70.7
(3)
A 		32
C 73.2
(2.6)
A 		77.2
(3)
A 		68.5
(2.2)
A 		12.1
(-3)
A 		65
avr 78.6
(3) 		63.4
(1) 		49.8
(-0.9) 		34
(-3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 75
1 2 3 4 5 6 range
A 44.9
(0.4)
A 		35.2
(-0.6)
A 		69.9
(3)
A 		24.6
(-1.8)
A 		40
(-0.1)
A 		12.7
(-3)
A 		57
B 73.9
(2.7)
A 		7.4
(-3)
A 		77.2
(3)
A 		27.7
(-1.3)
A 		65.8
(2)
A 		43
(0.1)
A 		70
C 34.7
(-3)
A 		72.6
(1.8)
A 		36
(-2.8)
A 		81.9
(3)
A 		51.8
(-0.8)
A 		41.3
(-2.2)
A 		47
avr 51.2
(1) 		38.4
(-1.7) 		61
(3) 		44.7
(-0.4) 		52.5
(1.2) 		32.3
(-3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 34.1
(3)
A 		15.1
(-0.6)
A 		11.1
(-1.4)
A 		2.8
(-3)
A 		31
B 22
(3)
A 		10.8
(-2.1)
A 		8.9
(-3)
A 		15.1
(-0.2)
A 		13
C 24.2
(3)
A 		22.2
(2.5)
A 		23.9
(2.9)
A 		2
(-3)
A 		22
avr 26.8
(3) 		16
(-0.2) 		14.6
(-0.6) 		6.6
(-3) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 8.3
(-0.4)
A 		12.5
(1.7)
A 		15.2
(3)
A 		6.2
(-1.5)
A 		12.1
(1.5)
A 		3.1
(-3)
A 		12
B 25.7
(2.8)
A 		2.5
(-3)
A 		18.7
(1)
A 		7.3
(-1.8)
A 		26.7
(3)
A 		16
(0.3)
A 		24
C 12.9
(-1.3)
A 		22.1
(3)
A 		9.2
(-3)
A 		16.5
(0.4)
A 		16.8
(0.5)
A 		13.8
(-0.9)
A 		13
avr 15.6
(1) 		12.4
(-1.3) 		14.4
(0.1) 		10
(-3) 		18.5
(3) 		11
(-2.3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174777_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21580
Sequence Type Exemplar sequence
Representative Public ID CEK071A3R NCBI
Target Description CEK071A3R_rc /REP_DB=TREMBL Accession /GB=D65923 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk71a3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067733(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067733 NCBI Caenorhabditis elegans Y41D4A.1 (Y41D4A.1) mRNA, complete cds. 11/11 A 
SNAP00000028260 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1773104:1774666:1 11/11 None
Y41D4A.1 ENSEMBL cdna:known chromosome:CEL140:IV:1772142:1774693:1 gene:Y41D4A.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1773569-1774689(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4A.1
Entrez Gene 176986 Entrez gene
WormBase CE39046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68451 Hypothetical protein Y41D4A.1 [Caenorhabditis elegans] ref|NP_500134.1| Y41D4A.1 [Caenorhabditis elegans] 1.0E-155
blast AAK68451 Hypothetical protein Y41D4A.1 [Caenorhabditis elegans] ref|NP_500134.1| Y41D4A.1 [Caenorhabditis elegans] 1.0E-117
blast CAE63842 Hypothetical protein CBG08398 [Caenorhabditis briggsae] 1.0E-103
blast CAE63842 Hypothetical protein CBG08398 [Caenorhabditis briggsae] 2.0E-96
blast CAB05152 Hypothetical protein C43F9.5 [Caenorhabditis elegans] ref|NP_501957.1| C43F9.5 [Caenorhabditis elegans] 1.0E-55
blast CAB05152 Hypothetical protein C43F9.5 [Caenorhabditis elegans] ref|NP_501957.1| C43F9.5 [Caenorhabditis elegans] 1.0E-50
Sequence
Target Sequence 
>C. ELEGANS:174777_AT
ggacttgtgggaatggaatctgcccaaatggattttcctgccaagcaaatggcaattgct
gtccctcgtgtccaaataatcagacaccttttggaagctgtgttgcaaaccggtgtggtg
gtggaagaacctgccggagtgggaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGACTTGTGGGAATGGAATCTGCCC 266 525 143 Antisense
TCTGCCCAAATGGATTTTCCTGCCA 577 609 161 Antisense
ATGGATTTTCCTGCCAAGCAAATGG 413 49 170 Antisense
GCAAATGGCAATTGCTGTCCCTCGT 126 319 187 Antisense
TGTCCCTCGTGTCCAAATAATCAGA 168 557 202 Antisense
AATAATCAGACACCTTTTGGAAGCT 574 169 217 Antisense
GACACCTTTTGGAAGCTGTGTTGCA 387 367 225 Antisense
GAAGCTGTGTTGCAAACCGGTGTGG 170 343 236 Antisense
GTTGCAAACCGGTGTGGTGGTGGAA 552 423 244 Antisense
GTGGTGGTGGAAGAACCTGCCGGAG 705 463 257 Antisense
GTGGAAGAACCTGCCGGAGTGGGAA 62 489 263 Antisense
Sequence Source Affymetrix Proprietary Database