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[174776_at]

Description CEK040D4R_rc /REP_DB=TREMBL Accession /GB=D34066 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40d4 : 3prime end, single read.
Cluster 6grp_total > 60      4grp_total > 08      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 31.3
(-2.7)
A 		51.5
(-0.2)
A 		28.4
(-3)
A 		78.6
(3)
P 		50
B 4.6
(-3)
A 		10.8
(-2.4)
A 		65.5
(3)
A 		24.1
(-1.1)
A 		61
C 21.3
(-2)
A 		13.1
(-2.7)
A 		8.5
(-3)
A 		88.3
(3)
P 		80
avr 19.1
(-3) 		25.1
(-2.2) 		34.1
(-1) 		63.7
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 72.3
(3)
A 		67.6
(2.3)
P 		63.6
(1.8)
A 		39.1
(-1.7)
A 		33.3
(-2.6)
A 		30.2
(-3)
A 		42
B 31.2
(-2.4)
A 		40.8
(-1.2)
A 		48.3
(-0.3)
A 		76.1
(3)
A 		50.4
(-0.1)
A 		26
(-3)
A 		50
C 38.5
(-0.5)
A 		37.4
(-0.6)
A 		17.2
(-3)
A 		67.9
(3)
A 		39.6
(-0.3)
A 		28.5
(-1.7)
A 		51
avr 47.3
(0.5) 		48.6
(0.7) 		43
(-0.3) 		61
(3) 		41.1
(-0.6) 		28.2
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 11.4
(2.9)
A 		11.2
(2.6)
A 		7.4
(-3)
A 		11.5
(3)
P 		4
B 1.5
(-3)
A 		2.7
(-2.5)
A 		15.2
(3)
A 		5.1
(-1.4)
A 		14
C 7
(-1)
A 		3.8
(-2.6)
A 		2.9
(-3)
A 		14.9
(3)
P 		12
avr 6.6
(-2.1) 		5.9
(-3) 		8.5
(0.4) 		10.5
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 13.3
(-0.8)
A 		24
(3)
P 		13.9
(-0.6)
A 		9.9
(-2.1)
A 		10.1
(-2)
A 		7.3
(-3)
A 		17
B 10.9
(-2.3)
A 		13.6
(-0.8)
A 		11.7
(-1.9)
A 		20.2
(2.8)
A 		20.5
(3)
A 		9.7
(-3)
A 		11
C 14.3
(3)
A 		11.4
(1.2)
A 		4.4
(-3)
A 		13.7
(2.6)
A 		12.8
(2.1)
A 		9.5
(0.1)
A 		10
avr 12.8
(0.2) 		16.3
(3) 		10
(-2) 		14.6
(1.6) 		14.5
(1.6) 		8.8
(-3) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174776_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20102
Sequence Type Exemplar sequence
Representative Public ID CEK040D4R NCBI
Target Description CEK040D4R_rc /REP_DB=TREMBL Accession /GB=D34066 /CHR=1 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk40d4 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NR_002350(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NR_002350 NCBI Caenorhabditis elegans W01B11.6, miscRNA. 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058738 1/11 Cross Hyb Matching Probes A 
W01B11.6a.1 1/11 Cross Hyb Matching Probes None
W01B11.6a.2 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3293198-3293512(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:174776_AT
aaatgtggcgtatagcacccgacacctcacgggttccgcaaaagataagtgggaggcgga
actcgcaggatgtcgggcgcacactgatcaaagtgagcagcccctttaacgaagttattt
ttcagagaagaagtgactcgacacgtcggagcagaagctgagaaagttcaagaattgttc
gagaaatacgctgtataattttggttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATGTGGCGTATAGCACCCGACAC 551 119 82 Antisense
CCTCACGGGTTCCGCAAAAGATAAG 318 265 106 Antisense
AGATAAGTGGGAGGCGGAACTCGCA 137 65 124 Antisense
GGAGGCGGAACTCGCAGGATGTCGG 499 515 133 Antisense
CGGAACTCGCAGGATGTCGGGCGCA 633 239 138 Antisense
GTCGGGCGCACACTGATCAAAGTGA 368 473 153 Antisense
GATCAAAGTGAGCAGCCCCTTTAAC 172 419 167 Antisense
AAAGTGAGCAGCCCCTTTAACGAAG 692 121 171 Antisense
GAGCAGCCCCTTTAACGAAGTTATT 707 387 176 Antisense
TTAACGAAGTTATTTTTCAGAGAAG 683 679 187 Antisense
GAAATACGCTGTATAATTTTGGTTT 525 363 264 Antisense
Sequence Source Affymetrix Proprietary Database