[Home] | [Total List]

[174775_at]

Description CEK027B3R_rc /REP_DB=TREMBL Accession /GB=D33165 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27b3 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 26      4grp_highest_8_8 > 51      4grp_high_8_8 > 32      6grp_highest_nonorm > 30      6grp_total > 16      4grp_total > 47      6grp_highest_sub > De      6grp_high1_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 716
1 2 3 4 range
A 1259.2
(3)
P 		699.8
(-1.9)
P 		620.2
(-2.6)
P 		575.7
(-3)
P 		684
B 1291.3
(3)
P 		750.7
(-1.8)
P 		618.8
(-3)
P 		834.3
(-1.1)
P 		673
C 1233.4
(3)
P 		648.7
(-3)
P 		697.7
(-2.5)
P 		684.1
(-2.6)
P 		585
avr 1261.3
(3) 		699.7
(-2.5) 		645.6
(-3) 		698
(-2.5) 		616

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 940
1 2 3 4 5 6 range
A 1416.8
(3)
P 		950
(-0)
P 		607.4
(-2.3)
P 		495.5
(-3)
P 		800
(-1)
P 		611.1
(-2.2)
P 		921
B 1157.8
(3)
P 		1116.5
(2.5)
P 		705.8
(-2)
P 		642
(-2.7)
P 		614.6
(-3)
P 		778.1
(-1.2)
P 		543
C 861.7
(1.5)
P 		993
(3)
P 		706.6
(-0.3)
P 		476.6
(-3)
P 		663.2
(-0.8)
P 		690
(-0.5)
P 		516
avr 1145.4
(3) 		1019.8
(1.8) 		673.3
(-1.7) 		538
(-3) 		692.6
(-1.5) 		693.1
(-1.5) 		607
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 374
1 2 3 4 range
A 458.5
(3)
P 		151.9
(-1.9)
P 		162.1
(-1.8)
P 		84.3
(-3)
P 		374
B 411.8
(3)
P 		185.4
(-2.1)
P 		143.4
(-3)
P 		177.8
(-2.2)
P 		268
C 408.3
(3)
P 		186.5
(-1.5)
P 		243.2
(-0.4)
P 		115.3
(-3)
P 		293
avr 426.2
(3) 		174.6
(-2) 		182.9
(-1.9) 		125.8
(-3) 		300

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 307
1 2 3 4 5 6 range
A 261.2
(0.8)
P 		337.9
(3)
P 		132.3
(-2.8)
P 		125.7
(-3)
P 		241.4
(0.3)
P 		148.8
(-2.3)
P 		212
B 402.9
(3)
P 		371.6
(2.2)
P 		171.4
(-3)
P 		170.1
(-3)
P 		249.7
(-0.9)
P 		290.1
(0.1)
P 		233
C 319.4
(3)
P 		303
(2.6)
P 		179.8
(-0.7)
P 		95.8
(-3)
P 		214.6
(0.2)
P 		231
(0.6)
P 		224
avr 327.8
(2.7) 		337.5
(3) 		161.2
(-2.1) 		130.5
(-3) 		235.2
(0) 		223.3
(-0.3) 		207
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174775_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.22162
Sequence Type Exemplar sequence
Representative Public ID CEK027B3R NCBI
Target Description CEK027B3R_rc /REP_DB=TREMBL Accession /GB=D33165 /CHR=X /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk27b3 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_077369(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_077369 NCBI Caenorhabditis elegans F57C7.1a (F57C7.1) mRNA, complete cds. 11/11 None
F57C7.1b ENSEMBL cdna:known chromosome:CEL140:X:10569199:10575635:1 gene:F57C7.1 11/11 None
F57C7.1a ENSEMBL cdna:known chromosome:CEL140:X:10569199:10575644:1 gene:F57C7.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
181257 2 1 NM_077369 174775_at (11), 193847_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:10575253-10575624(+) 100.0 100.0
Public Domain and Genome References
Ensembl F57C7.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93473 Hypothetical protein F57C7.1a [Caenorhabditis elegans] ref|NP_509770.2| F57C7.1a [Caenorhabditis elegans] 0.0
blast CAA93475 Hypothetical protein F57C7.1b [Caenorhabditis elegans] ref|NP_509771.1| F57C7.1b [Caenorhabditis elegans] 0.0
blast CAE60803 Hypothetical protein CBG04495 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR001990 EMBL-EBI Chromogranin/secretogranin 0.02
Pfam IPR001487 EMBL-EBI Bromodomain 8.2E-34
Pfam IPR001487 EMBL-EBI Bromodomain 4.3E-37
Pfam IPR001487 EMBL-EBI Bromodomain 5.6E-37
Sequence
Target Sequence 
>C. ELEGANS:174775_AT
ttgtttgaattccaagggtcccacattagcagtttgtcatggctgcagttacagtaacgt
ttctgtaaaaccaccttccattcactttcatccccgtcaatcaccacaatcatcatttca
aagccttctttacttgatcaacaacactgaatctcgtttgcagtagagagtattaataat
tattaaataggtttgtgtttaagaattaagtaattgtttgtttactttttgattgaatta
gaattacctcgtcccatcccaaattgatccatatactggattttttatctcaaattttac
ctcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGTTTGAATTCCAAGGGTCCCACA 531 703 34 Antisense
GGGTCCCACATTAGCAGTTTGTCAT 117 497 49 Antisense
GCAGTTTGTCATGGCTGCAGTTACA 78 313 62 Antisense
CGTCAATCACCACAATCATCATTTC 399 247 128 Antisense
ACAATCATCATTTCAAAGCCTTCTT 329 115 139 Antisense
AAGCCTTCTTTACTTGATCAACAAC 625 147 154 Antisense
TCAACAACACTGAATCTCGTTTGCA 540 629 171 Antisense
TTGTTTGTTTACTTTTTGATTGAAT 577 705 247 Antisense
TGAATTAGAATTACCTCGTCCCATC 499 575 267 Antisense
GTCCCATCCCAAATTGATCCATATA 460 475 284 Antisense
TTTTATCTCAAATTTTACCTCAAAT 444 675 316 Antisense
Sequence Source Affymetrix Proprietary Database