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[174773_at]

Description CEK015G1R_rc /REP_DB=TREMBL Accession /GB=D27620 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15g1 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 47      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 86      6grp_total > 47      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 939
1 2 3 4 range
A 1196.5
(3)
P 		368.6
(-3)
P 		459.6
(-2.3)
P 		1062.9
(2)
P 		828
B 1307.8
(3)
P 		733
(-1.4)
P 		525.7
(-3)
P 		1121.8
(1.6)
P 		782
C 1226.4
(3)
P 		661.7
(-2.3)
P 		583.3
(-3)
P 		948.8
(0.4)
P 		643
avr 1243.6
(3) 		587.8
(-2.5) 		522.9
(-3) 		1044.5
(1.3) 		721

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 756
1 2 3 4 5 6 range
A 1126.9
(3)
P 		969.7
(1.1)
P 		770.6
(-1.3)
P 		628.2
(-3)
P 		903.3
(0.3)
P 		982.6
(1.3)
P 		499
B 1380.4
(3)
P 		1076.6
(0.5)
P 		735.6
(-2.2)
P 		969.9
(-0.3)
P 		636.9
(-3)
P 		1289.5
(2.3)
P 		744
C 1011.2
(0.9)
P 		1139.5
(2.1)
P 		760.2
(-1.6)
P 		834.1
(-0.9)
P 		624.2
(-3)
P 		1224.7
(3)
P 		601
avr 1172.8
(3) 		1061.9
(1.5) 		755.5
(-2.5) 		810.7
(-1.8) 		721.5
(-3) 		1165.6
(2.9) 		451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 356
1 2 3 4 range
A 435.7
(3)
P 		80
(-3)
P 		120.2
(-2.3)
P 		155.6
(-1.7)
P 		356
B 417
(3)
P 		181
(-1.8)
P 		121.8
(-3)
P 		239
(-0.6)
P 		295
C 406
(3)
P 		190.2
(-2.3)
P 		203.3
(-1.9)
P 		160
(-3)
P 		246
avr 419.6
(3) 		150.4
(-3) 		148.4
(-3) 		184.9
(-2.2) 		271

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 322
1 2 3 4 5 6 range
A 207.7
(-1.4)
P 		344.9
(3)
P 		167.8
(-2.7)
P 		159.3
(-3)
P 		272.6
(0.7)
P 		239.2
(-0.4)
P 		186
B 480.3
(3)
P 		358.4
(0.6)
P 		178.6
(-3)
P 		256.9
(-1.4)
P 		258.7
(-1.4)
P 		480.9
(3)
P 		302
C 374.8
(2.1)
P 		347.7
(1.5)
P 		193.5
(-2.4)
P 		167.7
(-3)
P 		202
(-2.2)
P 		410
(3)
P 		242
avr 354.3
(2.3) 		350.3
(2.2) 		180
(-3) 		194.6
(-2.6) 		244.4
(-1) 		376.7
(3) 		197
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174773_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21265
Sequence Type Exemplar sequence
Representative Public ID CEK015G1R NCBI
Target Description CEK015G1R_rc /REP_DB=TREMBL Accession /GB=D27620 /CHR=4 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15g1 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069784 NCBI Caenorhabditis elegans F40F11.2 (F40F11.2) mRNA, complete cds. 11/11 None
F40F11.2 ENSEMBL cdna:known chromosome:CEL140:IV:11594295:11601831:1 gene:F40F11.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:11601247-11601644(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F40F11.2
Entrez Gene 178082 Entrez gene
SwissProt Q20207 EMBL-EBI
WormBase CE28557 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA97793 Hypothetical protein F40F11.2 [Caenorhabditis elegans] ref|NP_502185.1| F40F11.2 [Caenorhabditis elegans] 0.0
blast CAE62093 Hypothetical protein CBG06120 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:174773_AT
gaagaatcggtctcgacacgtacaccacgtcttttacagaagaaacctccctatgtactc
ttctggttgttcttgtctaatagtcaattcacttttcgaatttttttttccatcgaactc
actattttctcttttgtttagtcaatctaccccatttctcattccgtgctcaaaactccc
ttcatttttcattgttacatttttgtgagttccaattgataattgtgattttcgcgggta
cgagatctgttttccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGAATCGGTCTCGACACGTACAC 512 339 36 Antisense
GACACGTACACCACGTCTTTTACAG 602 365 50 Antisense
CAGAAGAAACCTCCCTATGTACTCT 441 205 72 Antisense
TATGTACTCTTCTGGTTGTTCTTGT 379 655 87 Antisense
GTCTAATAGTCAATTCACTTTTCGA 423 469 110 Antisense
TTTTTTTCCATCGAACTCACTATTT 609 675 138 Antisense
CGAACTCACTATTTTCTCTTTTGTT 545 251 149 Antisense
TTGTTTAGTCAATCTACCCCATTTC 620 705 169 Antisense
CAAAACTCCCTTCATTTTTCATTGT 155 191 206 Antisense
GATAATTGTGATTTTCGCGGGTACG 272 421 253 Antisense
GCGGGTACGAGATCTGTTTTCCAAT 232 291 269 Antisense
Sequence Source Affymetrix Proprietary Database