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[174771_at]

Description CEK017C2R_rc /REP_DB=TREMBL Accession /GB=D32465 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17c2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 07      4grp_highest_8_8 > 59      4grp_high_8_8 > 26      6grp_highest_nonorm > 10      6grp_total > 04      4grp_total > 38      6grp_cgc > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1210
1 2 3 4 range
A 1997.6
(3)
P 		1151.7
(-2.1)
P 		1001.6
(-3)
P 		1206.5
(-1.8)
P 		996
B 1681.2
(3)
P 		1083.5
(-1)
P 		787.2
(-3)
P 		1323.1
(0.6)
P 		894
C 1725.3
(3)
P 		1468
(1.2)
P 		888.6
(-3)
P 		901
(-2.9)
P 		837
avr 1801.4
(3) 		1234.4
(-0.7) 		892.5
(-3) 		1143.5
(-1.3) 		909

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1453
1 2 3 4 5 6 range
A 1876.3
(3)
P 		1474.2
(0.6)
P 		917.2
(-2.6)
P 		850
(-3)
P 		1046.5
(-1.9)
P 		925.2
(-2.6)
P 		1026
B 2237.1
(3)
P 		1833
(1.3)
P 		784.5
(-3)
P 		1428.6
(-0.3)
P 		863
(-2.7)
P 		1012.5
(-2.1)
P 		1453
C 1825.9
(1.7)
P 		1642.3
(0.8)
P 		1133.1
(-1.7)
P 		2080.5
(3)
P 		876.3
(-3)
P 		903.4
(-2.9)
P 		1204
avr 1979.8
(3) 		1649.8
(1.1) 		944.9
(-2.9) 		1453
(-0) 		928.6
(-3) 		947
(-2.9) 		1051
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 575
1 2 3 4 range
A 727.3
(3)
P 		250
(-2.2)
P 		261.8
(-2.1)
P 		176.6
(-3)
P 		551
B 536.1
(3)
P 		267.6
(-1.6)
P 		182.4
(-3)
P 		281.9
(-1.3)
P 		354
C 571.1
(3)
P 		422.1
(0.9)
P 		309.7
(-0.7)
P 		151.9
(-3)
P 		419
avr 611.5
(3) 		313.2
(-1.4) 		251.3
(-2.3) 		203.5
(-3) 		408

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 588
1 2 3 4 5 6 range
A 345.9
(-0.3)
P 		524.3
(3)
P 		199.8
(-3)
P 		215.6
(-2.7)
P 		315.8
(-0.9)
P 		225.3
(-2.5)
P 		325
B 778.4
(3)
P 		610.1
(1.3)
P 		190.5
(-3)
P 		378.4
(-1.1)
P 		350.6
(-1.4)
P 		377.6
(-1.1)
P 		588
C 676.8
(3)
P 		501.1
(0.3)
P 		288.4
(-2.9)
P 		418.4
(-0.9)
P 		283.6
(-3)
P 		302.4
(-2.7)
P 		393
avr 600.4
(3) 		545.2
(2.1) 		226.2
(-3) 		337.5
(-1.2) 		316.7
(-1.5) 		301.8
(-1.8) 		374
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174771_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20593
Sequence Type Exemplar sequence
Representative Public ID CEK017C2R NCBI
Target Description CEK017C2R_rc /REP_DB=TREMBL Accession /GB=D32465 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk17c2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026736(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026736 NCBI Caenorhabditis elegans CAN cell Migration defective family member (cam-1) (cam-1) mRNA, complete cds. 11/11 None
C01G6.8a ENSEMBL cdna:known chromosome:CEL140:II:9295831:9310215:-1 gene:C01G6.8 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
174473 2 1 NM_001026736 174771_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9295847-9296235(-) 100.0 100.0
Public Domain and Genome References
Ensembl C01G6.8
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD36478 Hypothetical protein C01G6.8a [Caenorhabditis elegans] emb|CAD36487.1| Hypothetical protein C01G6.8a [Caenorhabditis elegans] emb|CAC29084.1| receptor tyrosine kinase [Caenorhabditis elegans] ref|NP_001021907.1| CAN cell Migration defective family member (cam-1) [Caenorhabditis elegans] 0.0
blast CAA84639 Hypothetical protein C01G6.8b [Caenorhabditis elegans] emb|CAB61003.1| Hypothetical protein C01G6.8b [Caenorhabditis elegans] emb|CAC29085.1| receptor tyrosine kinase [Caenorhabditis elegans] ref|NP_001021908.1| CAN cell Migration defective family member (cam-1) [Caenorhabditis elegans] 0.0
blast CAE72905 Hypothetical protein CBG20223 [Caenorhabditis briggsae] 0.0
Protein Families
Method ID Description E-Value
hanks 1.6.3 AGC group; AGC VI phosphorylate ribosomal protein S6; RSK2N 4.0E-60
Protein Domains
Database ID Description E-Value
Pfam IPR000719 EMBL-EBI Protein kinase 4.7E-65
Pfam IPR000001 EMBL-EBI Kringle 6.1E-18
Pfam IPR007110 EMBL-EBI Immunoglobulin-like 3.8E-9
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021907.1 1 467-489
C01G6.8a 1 467-489
Sequence
Target Sequence 
>C. ELEGANS:174771_AT
tgttatgtagtttcagccatgcccagggtacttctctcactccgattcgagatttctatc
atttttgcagctaggaatttgacctgtctttcagcgggactttttctctaattattgata
tcattgagtattattcgtataatgttataggccatttctctaatattctgttttctctaa
ttaaaaaactagttaagaatgctaatatacaaagtctcactgcattgttagctcgacaaa
cagggtccttctcattaccccctgaccaaatctgaatta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTATGTAGTTTCAGCCATGCCCA 630 561 21 Antisense
ACTTCTCTCACTCCGATTCGAGATT 514 103 50 Antisense
CACTCCGATTCGAGATTTCTATCAT 155 199 58 Antisense
TTTCTATCATTTTTGCAGCTAGGAA 103 673 73 Antisense
GGAATTTGACCTGTCTTTCAGCGGG 45 533 94 Antisense
TTTCAGCGGGACTTTTTCTCTAATT 330 667 109 Antisense
GTTATAGGCCATTTCTCTAATATTC 253 447 164 Antisense
TTCTCTAATATTCTGTTTTCTCTAA 624 691 176 Antisense
AAGTCTCACTGCATTGTTAGCTCGA 176 155 232 Antisense
GACAAACAGGGTCCTTCTCATTACC 632 365 255 Antisense
TTACCCCCTGACCAAATCTGAATTA 71 683 275 Antisense
Sequence Source Affymetrix Proprietary Database