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[174770_at]

Description CEK015D2R_rc /REP_DB=TREMBL Accession /GB=D27613 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15d2 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 50      6grp_high1_10_10 > 05      4grp_high_8_8 > 51      6grp_highest_nonorm > 01      6grp_total > 06      4grp_total > 52      6grp_highest_sub > De      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1999
1 2 3 4 range
A 2213.2
(3)
P 		1761.9
(1.6)
P 		1931.9
(2.1)
P 		312.2
(-3)
A 		1901
B 2124.5
(3)
P 		2083.8
(2.9)
P 		1554.8
(1.1)
P 		324
(-3)
P 		1801
C 2055.8
(2.4)
P 		2267.8
(3)
P 		1923.2
(2)
P 		268.9
(-3)
P 		1999
avr 2131.2
(3) 		2037.8
(2.7) 		1803.3
(1.9) 		301.7
(-3) 		1830

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2969
1 2 3 4 5 6 range
A 3495.9
(3)
P 		2394.3
(0.3)
P 		1464.8
(-2)
P 		1188.4
(-2.7)
P 		1668.4
(-1.5)
P 		1064.5
(-3)
P 		2431
B 3291.6
(3)
P 		2569.4
(1.1)
P 		1307.7
(-2.3)
P 		1512.1
(-1.8)
P 		1340.9
(-2.2)
P 		1053.2
(-3)
P 		2238
C 3209.5
(3)
P 		2152.4
(0.6)
P 		1860.3
(-0)
P 		1132.6
(-1.6)
P 		1467.4
(-0.9)
P 		527.1
(-3)
P 		2682
avr 3332.3
(3) 		2372
(0.6) 		1544.3
(-1.4) 		1277.7
(-2) 		1492.2
(-1.5) 		881.6
(-3) 		2451
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 761
1 2 3 4 range
A 805.8
(3)
P 		382.5
(-0.3)
P 		505
(0.6)
P 		45.7
(-3)
A 		760
B 677.5
(3)
P 		514.7
(1.4)
P 		360.3
(-0.1)
P 		69.1
(-3)
P 		608
C 680.5
(3)
P 		652
(2.7)
P 		670.3
(2.9)
P 		45.3
(-3)
P 		635
avr 721.3
(3) 		516.4
(1.2) 		511.9
(1.1) 		53.4
(-3) 		668

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1013
1 2 3 4 5 6 range
A 644.4
(0.9)
P 		851.5
(3)
P 		319
(-2.4)
P 		301.4
(-2.6)
P 		503.4
(-0.5)
P 		259.2
(-3)
P 		592
B 1145.3
(3)
P 		855.2
(0.9)
P 		317.6
(-3)
P 		400.5
(-2.4)
P 		544.8
(-1.4)
P 		392.7
(-2.5)
P 		828
C 1189.6
(3)
P 		656.8
(-0.2)
P 		473.5
(-1.2)
P 		227.8
(-2.7)
P 		474.8
(-1.2)
P 		176.5
(-3)
P 		1013
avr 993.1
(3) 		787.8
(1.3) 		370
(-2.2) 		309.9
(-2.7) 		507.7
(-1.1) 		276.1
(-3) 		717
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174770_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.21228
Sequence Type Exemplar sequence
Representative Public ID CEK015D2R NCBI
Target Description CEK015D2R_rc /REP_DB=TREMBL Accession /GB=D27613 /CHR=3 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk15d2 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171070(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171070 NCBI Caenorhabditis elegans GEX Interacting protein family member (gei-16) (gei-16) mRNA, complete cds. 11/11 None
T17H7.4g.1 ENSEMBL cdna:known chromosome:CEL140:III:727215:732286:-1 gene:T17H7.4 11/11 A 
T17H7.4g.2 ENSEMBL cdna:known chromosome:CEL140:III:727215:743311:-1 gene:T17H7.4 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
175227 12 1 NM_001027598 188158_at (11)
NM_064843 188158_at (11)
NM_064844 188158_at (11)
NM_064845 188158_at (11)
NM_064846 181612_at (11)
NM_064847 188158_at (11)
NM_171067 188158_at (11)
NM_171068 188158_at (11)
NM_171069 188158_at (11)
NM_171070 174770_at (11), 188158_at (11)
NM_171071 188158_at (11)
NM_171859 188158_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:727228-727620(-) 100.0 100.0
Public Domain and Genome References
Ensembl T17H7.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM97955 Gex interacting protein protein 16, isoform g [Caenorhabditis elegans] ref|NP_741080.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 1.0E-167
blast AAM97959 Gex interacting protein protein 16, isoform k [Caenorhabditis elegans] ref|NP_741077.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 1.0E-162
blast AAK77638 Gex interacting protein protein 16, isoform a [Caenorhabditis elegans] ref|NP_497245.1| GEX Interacting protein family member (gei-16) [Caenorhabditis elegans] 1.0E-162
Sequence
Target Sequence 
>C. ELEGANS:174770_AT
gtgccaactgcgctcaatttttgcaaaaaccttccgcatttcttctactgccccaattca
tttttcctttcggtgctcacttttccccccaattcgcttcatgatttgatgattgattcc
ataataccaatatatatcctaaaactcgattccctaaaaaatttcagtttttttttctaa
cgtcttctccccatgttgcttccagtgccactttttctatgtaataatcaaacaaaaatt
gtgactaatgctcagaaactgcctatttttttcattgtttcactatgaacatatgaactt
ttttacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCCAACTGCGCTCAATTTTTGCA 76 479 42 Antisense
TTGCAAAAACCTTCCGCATTTCTTC 609 685 62 Antisense
CAATTCATTTTTCCTTTCGGTGCTC 591 179 95 Antisense
CCCCCAATTCGCTTCATGATTTGAT 499 261 127 Antisense
TTGATGATTGATTCCATAATACCAA 529 705 147 Antisense
TATATCCTAAAACTCGATTCCCTAA 217 639 174 Antisense
TTCCAGTGCCACTTTTTCTATGTAA 99 699 241 Antisense
GTGCCACTTTTTCTATGTAATAATC 171 477 246 Antisense
TGTGACTAATGCTCAGAAACTGCCT 413 555 281 Antisense
GAAACTGCCTATTTTTTTCATTGTT 522 357 296 Antisense
TATGAACATATGAACTTTTTTACAA 321 653 325 Antisense
Sequence Source Affymetrix Proprietary Database