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[174769_at]

Description CEK085G8R_rc /REP_DB=TREMBL Accession /GB=D72040 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk85g8 : 3prime end, single read.
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 15      4grp_high_8_8 > 14      6grp_highest_nonorm > 55      6grp_total > 84      4grp_total > 09      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4505
1 2 3 4 range
A 545.6
(-3)
P 		1250.6
(-1.7)
P 		737.4
(-2.6)
P 		3792
(3)
P 		3246
B 456.1
(-3)
P 		993
(-2.3)
P 		755
(-2.6)
P 		4961.2
(3)
P 		4505
C 524.7
(-3)
P 		1054.5
(-2.1)
P 		865.2
(-2.4)
P 		4198.7
(3)
P 		3674
avr 508.8
(-3) 		1099.4
(-2.1) 		785.9
(-2.6) 		4317.3
(3) 		3809

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2397
1 2 3 4 5 6 range
A 1219.7
(-2)
P 		969.2
(-3)
P 		1676.4
(-0.1)
P 		2351.4
(2.6)
P 		2455.7
(3)
P 		2324.3
(2.5)
P 		1487
B 1091.5
(-2.8)
P 		1014
(-3)
P 		1232.5
(-2.3)
P 		2893.5
(3)
P 		1933.8
(-0.1)
P 		2334.7
(1.2)
P 		1880
C 837.8
(-3)
P 		1008
(-2.6)
P 		1679.7
(-0.9)
P 		3234.3
(3)
P 		1972.4
(-0.2)
P 		1991.7
(-0.1)
P 		2397
avr 1049.7
(-2.8) 		997.1
(-3) 		1529.5
(-1.3) 		2826.4
(3) 		2120.6
(0.7) 		2216.9
(1) 		1829
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 912
1 2 3 4 range
A 198.7
(-2.9)
P 		271.5
(-1.7)
P 		192.8
(-3)
P 		555.1
(3)
P 		362
B 145.4
(-3)
P 		245.2
(-2.3)
P 		175
(-2.8)
P 		1057.2
(3)
P 		912
C 173.7
(-3)
P 		303.2
(-1.5)
P 		301.5
(-1.6)
P 		708
(3)
P 		534
avr 172.6
(-3) 		273.3
(-2) 		223.1
(-2.5) 		773.4
(3) 		601

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 646
1 2 3 4 5 6 range
A 224.8
(-3)
P 		344.7
(-1.6)
P 		365.1
(-1.4)
P 		596.4
(1.3)
P 		741
(3)
P 		565.9
(1)
P 		516
B 379.8
(-2.2)
P 		337.5
(-2.6)
P 		299.3
(-3)
P 		766.4
(1.9)
P 		785.7
(2.1)
P 		870.6
(3)
P 		571
C 310.5
(-3)
P 		307.6
(-3)
P 		427.5
(-1)
P 		650.4
(2.7)
P 		638.2
(2.5)
P 		666.7
(3)
P 		359
avr 305
(-3) 		329.9
(-2.6) 		364
(-2.2) 		671.1
(2.3) 		721.6
(3) 		701.1
(2.7) 		417
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 174769_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.20784
Sequence Type Exemplar sequence
Representative Public ID CEK085G8R NCBI
Target Description CEK085G8R_rc /REP_DB=TREMBL Accession /GB=D72040 /CHR=2 /FEA=Genomic Cluster /DEF=C.elegans cDNA clone yk85g8 : 3prime end, single read.
Cluster Evidence This cluster is supported by a Genomic Cluster.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182224(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182224 NCBI Caenorhabditis elegans F18C5.10 (F18C5.10) mRNA, complete cds. 11/11 None
F18C5.10.1 ENSEMBL cdna:known chromosome:CEL140:II:6559216:6561405:-1 gene:F18C5.10 11/11 None
F18C5.10.2 ENSEMBL cdna:known chromosome:CEL140:II:6559216:6561389:-1 gene:F18C5.10 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:6559222-6559556(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F18C5.10
Entrez Gene 174082 Entrez gene
SwissProt Q8MQ73 EMBL-EBI
WormBase CE31790 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6412 protein biosynthesis inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5622 intracellular inferred from electronic annotation QuickGO AmiGO
5840 ribosome inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3735 structural constituent of ribosome inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAM98030 Hypothetical protein F18C5.10 [Caenorhabditis elegans] ref|NP_872024.1| F18C5.10 [Caenorhabditis elegans] 1.0E-157
blast T16088 hypothetical protein F18C5.4 - Caenorhabditis elegans 1.0E-157
blast CAE59345 Hypothetical protein CBG02690 [Caenorhabditis briggsae] 1.0E-101
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_872024.1 4 55-74,117-139,151-173,233-255
F18C5.10.1 4 55-74,117-139,151-173,233-255
F18C5.10.2 4 55-74,117-139,151-173,233-255
Sequence
Target Sequence 
>C. ELEGANS:174769_AT
gggcctgttccgtaagtaatataagttccaaactacctccctcaattaatattttggcaa
gtactttacggaattggccttgtgtctcccagagatcttcaatttttccgatttacctct
tgaatttccccaatcttttaattcgacttatgaagtctctcccctttgttcgttctccct
gtcaatctacctttttacatgttcgattcacgagtttcaaactctaatttcgctctcaca
aagaaacaactctacttcttcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGGCCTGTTCCGTAAGTAATATAAG 364 491 38 Antisense
CAAACTACCTCCCTCAATTAATATT 157 191 66 Antisense
TTACGGAATTGGCCTTGTGTCTCCC 132 669 103 Antisense
GTCTCCCAGAGATCTTCAATTTTTC 697 469 121 Antisense
TTCAATTTTTCCGATTTACCTCTTG 399 685 135 Antisense
TCTTGAATTTCCCCAATCTTTTAAT 22 617 155 Antisense
TTCGACTTATGAAGTCTCTCCCCTT 10 691 179 Antisense
TCCCTGTCAATCTACCTTTTTACAT 647 597 213 Antisense
ACCTTTTTACATGTTCGATTCACGA 506 37 226 Antisense
TTCAAACTCTAATTTCGCTCTCACA 132 687 253 Antisense
AAAGAAACAACTCTACTTCTTCATT 338 119 277 Antisense
Sequence Source Affymetrix Proprietary Database